PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Kalax.0067s0070.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 119aa MW: 13696.9 Da PI: 10.7148

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0067s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41	3.3e-13	4	32	28	56
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +e+e LA++l+L++rqV vWFqNrRa+ k Kalax.0067s0070.1.p 4 SEKETLADQLKLKTRQVEVWFQNRRARSK 32 6899***********************99 PP
2	HD-ZIP_I/II	75.1	1.3e-24	5	66	28	89
HD-ZIP_I/II 28 rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +K++la +L+l++rqv+vWFqnrRAR k+kq+E++ + Lk+++++l+++n+rL+++ +eLr+ Kalax.0067s0070.1.p 5 EKETLADQLKLKTRQVEVWFQNRRARSKSKQMEVELHLLKQRCENLSDQNQRLKDQIRELRA 66 799*********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.827	1	34	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-11	3	32	IPR009057	Homeodomain-like
CDD	cd00086	8.60E-8	4	35	No hit	No description
Pfam	PF00046	1.5E-10	4	32	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.04E-10	4	42	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	9	32	IPR017970	Homeobox, conserved site
Gene3D	G3DSA:1.10.287.510	3.8E-4	33	101	No hit	No description
SMART	SM00340	3.6E-6	34	77	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MVVSEKETLA DQLKLKTRQV EVWFQNRRAR SKSKQMEVEL HLLKQRCENL SDQNQRLKDQ 60 IRELRATNLI GPRPSLFEAK LVKLAPSPIC PSCNKPFTVE DSPFSVKLKS THRQKLQG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	34	RRARSKSKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410384.1	3e-27	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
Refseq	XP_017410385.1	3e-27	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2
Refseq	XP_017410386.1	3e-27	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X3
TrEMBL	A0A0L9TG71	7e-26	A0A0L9TG71_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R8K6	7e-26	A0A0S3R8K6_PHAAN; Uncharacterized protein
STRING	GLYMA13G00310.1	2e-23	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	6e-22	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Kalax.0067s0070.1.p