PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0066s0070.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 324aa MW: 34976.6 Da PI: 9.2485

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0066s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.6	1.2e-12	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Kalax.0066s0070.1.p 60 RQSWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104 899***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.73E-16	54	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.023	55	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-6	58	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-18	58	107	IPR006447	Myb domain, plants
SMART	SM00717	9.9E-10	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-10	60	104	IPR001005	SANT/Myb domain
CDD	cd00167	1.36E-7	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVSNSSNPPD AFYLDPTGMA LPGLSMFPGG AGAGAFGDAL EAGDDVDKKV RKPYTITKSR 60 QSWTEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK SGGSEHLPPP 120 RPKRKAAHPY PHKASKSVLA LPQLMGPHLS SASASSLPQP RFLLKNDVPS IPSVPACNGG 180 AMASSRTDKS GQASAPAIPN ASRGDLKSTA EAMAINSNNN SAESTLRVQS ASRIPLQANK 240 SQAIRVLPDF AQVYGFIGSV FDPNTSGHLQ NLKQMDPIDV ETVLLLMRNL SINLTSPDFE 300 DHRKLMTTDE FDPKEPSYDV VGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022996005.1	1e-122	protein REVEILLE 6-like
Refseq	XP_023534789.1	1e-122	protein REVEILLE 6-like
Swissprot	Q8H0W3	1e-102	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A2R6RSP3	1e-119	A0A2R6RSP3_ACTCH; Protein REVEILLE like
STRING	Gorai.008G274500.1	1e-119	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	3e-86	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0066s0070.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]