PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0064s0074.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33367.1 Da    PI: 4.6447
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0064s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1859112356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL++rqV +WFqNrRa++k
  Kalax.0064s0074.1.p  59 KKRRLSLHQVKALEQSFEVENKLEPERKVRLAQELGLQQRQVAIWFQNRRARWK 112
                          5668999**********************************************9 PP
2HD-ZIP_I/II125.82e-4058150193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE+sFe e+kLeperKv+la+eLglq+rqva+WFqnrRAR+ktkqlE+dy aLk++yd+lk   ++L++++++L+++
  Kalax.0064s0074.1.p  58 EKKRRLSLHQVKALEQSFEVENKLEPERKVRLAQELGLQQRQVAIWFQNRRARWKTKQLERDYGALKSNYDSLKLGFDALQRDKDSLHKQ 147
                          69***************************************************************************************9 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Kalax.0064s0074.1.p 148 IRD 150
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1949116IPR009057Homeodomain-like
PROSITE profilePS5007117.57254114IPR001356Homeobox domain
SMARTSM003892.6E-1757118IPR001356Homeobox domain
PfamPF000461.4E-1559112IPR001356Homeobox domain
CDDcd000862.24E-1759115No hitNo description
Gene3DG3DSA:1.10.10.604.6E-1961121IPR009057Homeodomain-like
PRINTSPR000315.4E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000315.4E-694110IPR000047Helix-turn-helix motif
PfamPF021833.8E-17114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKRPRNSDSL GAALMSVCPD SDGLDQAHVY SRELQSLLEG FDSDGCVEES CGGGQMSEKK  60
RRLSLHQVKA LEQSFEVENK LEPERKVRLA QELGLQQRQV AIWFQNRRAR WKTKQLERDY  120
GALKSNYDSL KLGFDALQRD KDSLHKQIRD LKSKLNQETP DQSNNLLIED DGDDTELIIA  180
EPPQNAILND ISSVVSFSTD FKEGFTPTTT ATSSADSGFS AILNDSKGSP NGAVSSALLQ  240
SAILTASSCS GYHPELVKME ERSLFMVEES CDFFSEEQAP TLHWYCPDQW TRDPTRFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682441e-36AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068181e-36AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankAP0053911e-36AP005391.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08.
GenBankAP0149641e-36AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-36CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8294461e-36CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288161.13e-90PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
RefseqXP_011465283.14e-90PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
RefseqXP_021636428.12e-90homeobox-leucine zipper protein ATHB-6
TrEMBLA0A1Q3B5I23e-89A0A1Q3B5I2_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein
STRINGXP_004288161.11e-89(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-64homeobox protein 16