PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0063s0138.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 203aa    MW: 23109.9 Da    PI: 7.5658
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0063s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-192882357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         k+ ++t +qle Le+ F ++ +++ +++ +LA+ lgL+ rq+ vWFqNrRa++k+
  Kalax.0063s0138.1.p 28 KKKRLTCDQLESLEKSFLEEIKLDPDRKIRLARDLGLQPRQIAVWFQNRRARWKN 82
                         5567999**********************************************95 PP
2HD-ZIP_I/II116.61.4e-3728118292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kk+rl+ +q+++LE+sF ee kL+p+rK +lar+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk++y+ +++e+++L++ev +L++ l
  Kalax.0063s0138.1.p  28 KKKRLTCDQLESLEKSFLEEIKLDPDRKIRLARDLGLQPRQIAVWFQNRRARWKNKQLERLYDALKQEYEVVAREKQKLQDEVVKLQAML 117
                          9****************9999******************************************************************988 PP

          HD-ZIP_I/II  92 k 92 
                          +
  Kalax.0063s0138.1.p 118 R 118
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-191885IPR009057Homeodomain-like
PROSITE profilePS5007117.072383IPR001356Homeobox domain
SMARTSM003893.2E-162587IPR001356Homeobox domain
PfamPF000462.9E-162882IPR001356Homeobox domain
CDDcd000865.83E-152884No hitNo description
Gene3DG3DSA:1.10.10.603.4E-203090IPR009057Homeodomain-like
PRINTSPR000312.6E-55463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000312.6E-56379IPR000047Helix-turn-helix motif
PfamPF021832.9E-783117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEKNNQKLSN SNSETNDHNY CGNNMQDKKK RLTCDQLESL EKSFLEEIKL DPDRKIRLAR  60
DLGLQPRQIA VWFQNRRARW KNKQLERLYD ALKQEYEVVA REKQKLQDEV VKLQAMLREH  120
GVRNQVSATG YTEVSGEDTI ESAAVVVGNS RPQPAAPLLT GPHQIEETIN YPQAADQGYT  180
TPLPVQPGYW QGGGIHQLPP YP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202889.26e-64putative homeobox-leucine zipper protein ATHB-51
RefseqXP_018836202.16e-64PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
SwissprotQ9LZR05e-53ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1R3IN468e-64A0A1R3IN46_9ROSI; Uncharacterized protein
TrEMBLA0A1R3KHF92e-63A0A1R3KHF9_COCAP; Uncharacterized protein
STRINGEMJ040885e-63(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-55homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]