PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0063s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25833.6 Da    PI: 4.6299
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0063s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-203487356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         k++++ ++ql++Le+ Fe ++++  e++ +LA +lgL+ rqV vWFqNrRa++k
  Kalax.0063s0013.1.p 34 KKRRLRPHQLKALERSFEAENKLESERKVQLAFELGLDPRQVAVWFQNRRARWK 87
                         556899***********************************************9 PP
2HD-ZIP_I/II119.91.4e-3834123291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl  +q+k+LE+sFe+e+kLe+erKv+la eLgl+prqvavWFqnrRAR+ktkqlE+d++ L++ayd l+++ +++++++e+L  ++
  Kalax.0063s0013.1.p  34 KKRRLRPHQLKALERSFEAENKLESERKVQLAFELGLDPRQVAVWFQNRRARWKTKQLERDFNLLQSAYDDLRHNYDAVKRDNETLILQI 123
                          9***********************************************************************************998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-192087IPR009057Homeodomain-like
SuperFamilySSF466898.98E-202791IPR009057Homeodomain-like
PROSITE profilePS5007117.1512989IPR001356Homeobox domain
SMARTSM003896.9E-173293IPR001356Homeobox domain
CDDcd000862.89E-163490No hitNo description
PfamPF000462.0E-173487IPR001356Homeobox domain
PRINTSPR000311.9E-56069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000311.9E-56985IPR000047Helix-turn-helix motif
PfamPF021835.3E-1389130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMKSSGSKRE FDSDVAFEVE EDEEFMEGSA QPDKKRRLRP HQLKALERSF EAENKLESER  60
KVQLAFELGL DPRQVAVWFQ NRRARWKTKQ LERDFNLLQS AYDDLRHNYD AVKRDNETLI  120
LQIGEIKQKL MVESGSSEKI GEGHYGRSFN YETAFHSNVN VVSPDSATSG MHSEENNSLN  180
GVVSSCGIPW IVEDAPSPAM WPAATYSFLA DEDPDPMFDW YCQNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGBo3g152870.12e-42(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.18e-43homeobox protein 6