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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kalax.0060s0051.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
NF-YB |
| Protein Properties |
Length: 177aa MW: 19471 Da PI: 6.1499 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0060s0051.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 170.5 | 1.8e-53 | 30 | 126 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
vreqdrf+Pianv+rim+k+lP+++kis+daket+qecvse+i+f+tsea+++cq+e+rkt++++d+lwa+++lGf++y+epl++yl++y
Kalax.0060s0051.1.p 30 VREQDRFMPIANVIRIMRKILPSHTKISDDAKETIQECVSEYIGFITSEANERCQHEQRKTVTAEDVLWAMSKLGFDNYIEPLTLYLHRY 119
69**************************************************************************************** PP
NF-YB 91 relegek 97
r++eg++
Kalax.0060s0051.1.p 120 RDTEGDR 126
*****97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MKLTDNNMKL PGGGSSNGAT VPADDSECIV REQDRFMPIA NVIRIMRKIL PSHTKISDDA 60
KETIQECVSE YIGFITSEAN ERCQHEQRKT VTAEDVLWAM SKLGFDNYIE PLTLYLHRYR 120
DTEGDRGAVR GDPLVFKRAP LAEYGLEVAA GYGAFLAAAT FHTGHHHGFS GGPPGMG
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF605515 | 1e-175 | EF605515.1 Kalanchoe pinnata leafy cotyledon 1-like (LEC1) gene, partial sequence. |
| Publications
? help Back to Top |
- Jia H,McCarty DR,Suzuki M
Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
Plant Physiol., 2013. 163(3): p. 1293-305
[PMID:24043445] - Kim HU, et al.
Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues.
FEBS Open Bio, 2013. 4: p. 25-32
[PMID:24363987] - Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
Mol Plant, 2017. 10(4): p. 645-648
[PMID:27871811] - Li D, et al.
MYB89 Transcription Factor Represses Seed Oil Accumulation.
Plant Physiol., 2017. 173(2): p. 1211-1225
[PMID:27932421] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Han JD, et al.
Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.
Front Plant Sci, 2017. 8: p. 439
[PMID:28421087]
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