PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0059s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 315aa    MW: 34547 Da    PI: 6.7755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0059s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.1e-06186230655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++ r+RR++i ++ +eL +l+P         +++ ae+ + A  Y+k Lq
  Kalax.0059s0040.1.p 186 SIAARQRRRKIADKTQELGKLIPGgH------RMNTAEMFQSASMYVKFLQ 230
                          6788*******************954......9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.509180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-9183238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-6183234No hitNo description
Gene3DG3DSA:4.10.280.103.3E-9184237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGLSCHMSNR SAADYMLQQE QLLLELGCFQ DDFTFAHTSI DALFHPPPQK HPSFIPQPPQ  60
LQTTHYDNFS SQLLPCVQQK SCHPKRQKIA PWPHPNQQSD TRFNYDSMLA CGTVPFVDGC  120
WSSAADDAQL LLPLAQEFQG GDQSWLQDDF PAEAFLCGAT ADRPGSGNNS SRPGGGGGGG  180
GLSAQSIAAR QRRRKIADKT QELGKLIPGG HRMNTAEMFQ SASMYVKFLQ AQIAMLTLTD  240
SLQGAVSSES VDEGRQQIQV LVASPVVQEK LYTQEKCLVP RRLVQSLPRD SKLQSQHPSL  300
IKQINTLLQT PQAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.18e-25bHLH family protein