PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0058s0081.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 417aa    MW: 46740.4 Da    PI: 6.8867
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0058s0081.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.19.3e-1385140255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GV++++++gr++A+++d  ++n+ ++k+   g +g +e Aa a++ a++k++g
  Kalax.0058s0081.2.p  85 TFRGVTRHRWTGRYEAHLWDkNCWNQsQNKKGKQGAYGDEEAAAHAYDLAALKYWG 140
                          69******************99999998855555********************98 PP
2AP251.91.9e-16183234155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+ +++g
  Kalax.0058s0081.2.p 183 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAEAYDMAAIEYRG 234
                          89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-1484150IPR016177DNA-binding domain
PROSITE profilePS5103217.76785148IPR001471AP2/ERF domain
SMARTSM003805.3E-1885154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-1285149IPR001471AP2/ERF domain
PfamPF008473.8E-886140IPR001471AP2/ERF domain
PRINTSPR003671.7E-58697IPR001471AP2/ERF domain
PfamPF008477.6E-12183234IPR001471AP2/ERF domain
CDDcd000189.98E-24183244No hitNo description
SuperFamilySSF541712.03E-17183244IPR016177DNA-binding domain
SMARTSM003804.3E-27184248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18184243IPR001471AP2/ERF domain
PROSITE profilePS5103218.558184242IPR001471AP2/ERF domain
PRINTSPR003671.7E-5224244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPKLPHPDQN QITRTNKDQM ESHNKKKKSE IKKDSADAIC TDNKLINIAA ALKVDAAVTN  60
KKKKQQPRRS RKAVPRDAPP QRTSTFRGVT RHRWTGRYEA HLWDKNCWNQ SQNKKGKQGA  120
YGDEEAAAHA YDLAALKYWG PQSILNFPLS TYEEELKGME DQSREEYIGS LRRKSSGFSR  180
GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL YLGTFATQEE AAEAYDMAAI EYRGLNAVTN  240
FDLSRYAKWL SCSHQEPNAH KSDSNLMSHN QLGHHQAADS SLFTFPAASL SENYTSEDAD  300
EAALMNNTTS ADQWGRTTQN SKEEEEFYPS YSNTTTTSAA ATLSSGEDSD SKSSSTVTNK  360
RFFPDDIQTI FECTQQESVS SMCAGTTDFI HIGSEDMIFG EAELSSFTSS LFDLDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632327.11e-127AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9UNY01e-126A0A2C9UNY0_MANES; Uncharacterized protein
STRINGcassava4.1_025233m1e-126(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-88ARIA-interacting double AP2 domain protein