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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0058s0081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 47115.8 Da PI: 6.8866 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.9 | 1.8e-16 | 85 | 143 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++n+ k+ k+++lg +g +e Aa a++ a++k++g Kalax.0058s0081.1.p 85 TFRGVTRHRWTGRYEAHLWDkNCWNQsqnKKgKQVYLGAYGDEEAAAHAYDLAALKYWG 143 69******************999977766447*************************98 PP | |||||||
2 | AP2 | 51.9 | 1.9e-16 | 186 | 237 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg+f t eeAa+a++ a+ +++g Kalax.0058s0081.1.p 186 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAEAYDMAAIEYRG 237 89****99**********988422...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-16 | 84 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 85 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 85 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-24 | 85 | 157 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-12 | 86 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 86 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-12 | 186 | 237 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.27E-24 | 186 | 247 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-17 | 186 | 247 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 187 | 246 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 187 | 245 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-27 | 187 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 227 | 247 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MPKLPHPDQN QITRTNKDQM ESHNKKKKSE IKKDSADAIC TDNKLINIAA ALKVDAAVTN 60 KKKKQQPRRS RKAVPRDAPP QRTSTFRGVT RHRWTGRYEA HLWDKNCWNQ SQNKKGKQVY 120 LGAYGDEEAA AHAYDLAALK YWGPQSILNF PLSTYEEELK GMEDQSREEY IGSLRRKSSG 180 FSRGVSKYRG VARHHHNGRW EARIGRVLGN KYLYLGTFAT QEEAAEAYDM AAIEYRGLNA 240 VTNFDLSRYA KWLSCSHQEP NAHKSDSNLM SHNQLGHHQA ADSSLFTFPA ASLSENYTSE 300 DADEAALMNN TTSADQWGRT TQNSKEEEEF YPSYSNTTTT SAAATLSSGE DSDSKSSSTV 360 TNKRFFPDDI QTIFECTQQE SVSSMCAGTT DFIHIGSEDM IFGEAELSSF TSSLFDLDQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051280.1 | 1e-131 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_028051281.1 | 1e-131 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
TrEMBL | A0A0D2Q6I2 | 1e-128 | A0A0D2Q6I2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JJ90 | 1e-128 | A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
STRING | Gorai.009G008800.1 | 1e-129 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-92 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0058s0081.1.p |