PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0058s0060.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 909aa    MW: 101822 Da    PI: 9.0028
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0058s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074580340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W+  E +++++a +++G++ Wk++a+ +   R+ +++
  Kalax.0058s0060.2.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAAAVR-SRSVEMV 80
                         6*****************99.********9.9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00364290IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-94489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-44579IPR009057Homeodomain-like
PfamPF002499.6E-74580IPR001005SANT/Myb domain
CDDcd001672.88E-54680No hitNo description
SMARTSM011352.8E-58590691IPR033471DIRP domain
PfamPF065841.6E-32590690IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMERSDSE  120
QESNEGRDQE APQRAQKRSR RKFHNSKFKD MDHNLPDYSP SRFVGSTSDC LSLLKANLPG  180
SEPRVVGKRT PRVPVVHTSD KDIRDKNFSA KPGRKFKMNA DDHVAHEIAL ALTKASQKDK  240
SPRISQSNRA SQGKIGNVSS PAKSDDRMHF IEGTSAQLQG SARDEQDHQG SMGSIDVDNL  300
RSGSTLRDRE VFGTLDIQKK GLRSYGKNVI AETGNDHLDD MKEACSGTEE QNSSAFSNKH  360
GFENPKQLIS KGTKKRNKKI LFDEDENAAF EALNTLADLS LTMPEPFLDN DNRGADINTS  420
SAKSKGNNSF GGDEDTNIKF ISSDTDRGGN VGTIPDSEDK TGIRKRKPKS LPFCMENLKM  480
EPHLYHTGNF PNSEDVEDAN KSLSKGHHKE GEHVNASTLN VSRESAGDFS SKNRNWRKRD  540
LPKSVNLKDT NYSVQVESGR PTDGILNLKA KLANCLSWRK SQRWCTFEWF YSAIDYPWFA  600
RREFVEYLDH VGLGHIPRLT RVEWGVIRSS LGKPRRFSQQ FLKEEKEKLN QYRESVRNHY  660
AELRLGAREG LPTDLARPLS VGQRVIAIHP KTREIHDGSV LTVDRSRCHV QFDKPDLGVE  720
FVMDIDCMPL NPLENMPASL AINKLSENHN GVKLNGLTSH HSASLHPNGN IDNPDDPLLR  780
PWSDSLVDQS KKTVKDNIPS SNVQAKARSS GPISGQEAAD QPSFLAQSKE ADVKALYEMT  840
CALDKKEAIV SEFKRMNDEV EENKRSDSLF EVPESFSKRY ASVLVQLDEV NDQASILSFM  900
IHKLLLSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908919.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908920.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908921.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908922.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A2I4F3380.0A0A2I4F338_JUGRE; protein ALWAYS EARLY 3 isoform X1
STRINGXP_004159845.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding