PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0058s0060.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 1101aa MW: 122456 Da PI: 8.3607

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0058s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ E +++++a +++G++ Wk++a+ + R+ +++ Kalax.0058s0060.1.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAAAVR-SRSVEMV 80 6***************99.******9.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0036	42	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-9	44	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-4	45	79	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	2.31E-5	46	80	No hit	No description
SMART	SM01135	2.8E-58	590	691	IPR033471	DIRP domain
Pfam	PF06584	2.1E-32	590	690	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1101 aa Download sequence Send to blast
MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK 60 YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMERSDSE 120 QESNEGRDQE APQRAQKRSR RKFHNSKFKD MDHNLPDYSP SRFVGSTSDC LSLLKANLPG 180 SEPRVVGKRT PRVPVVHTSD KDIRDKNFSA KPGRKFKMNA DDHVAHEIAL ALTKASQKDK 240 SPRISQSNRA SQGKIGNVSS PAKSDDRMHF IEGTSAQLQG SARDEQDHQG SMGSIDVDNL 300 RSGSTLRDRE VFGTLDIQKK GLRSYGKNVI AETGNDHLDD MKEACSGTEE QNSSAFSNKH 360 GFENPKQLIS KGTKKRNKKI LFDEDENAAF EALNTLADLS LTMPEPFLDN DNRGADINTS 420 SAKSKGNNSF GGDEDTNIKF ISSDTDRGGN VGTIPDSEDK TGIRKRKPKS LPFCMENLKM 480 EPHLYHTGNF PNSEDVEDAN KSLSKGHHKE GEHVNASTLN VSRESAGDFS SKNRNWRKRD 540 LPKSVNLKDT NYSVQVESGR PTDGILNLKA KLANCLSWRK SQRWCTFEWF YSAIDYPWFA 600 RREFVEYLDH VGLGHIPRLT RVEWGVIRSS LGKPRRFSQQ FLKEEKEKLN QYRESVRNHY 660 AELRLGAREG LPTDLARPLS VGQRVIAIHP KTREIHDGSV LTVDRSRCHV QFDKPDLGVE 720 FVMDIDCMPL NPLENMPASL AINKLSENHN GVKLNGLTSH HSASLHPNGN IDNPDDPLLR 780 PWSDSLVDQS KKTVKDNIPS SNVQAKARSS GPISGQEAAD QPSFLAQSKE ADVKALYEMT 840 CALDKKEAIV SEFKRMNDEV EENKRSDSLF EVPESFSKRY ASVLVQLDEV NDQVTLALRC 900 LRQRNTYQGS FGLISAKPAL VDIGVVTGTL NYSTSDTSKQ ETHVPEIVEG STSKAQKMVN 960 AAMKAMSSLK SSVHDGVEEA IDYLNTQLSQ EEPNVSTDRS VPVPATPGKQ RAINSADPKM 1020 NTTPDSNAQI PSELITNCVA TLFMIQKCTE REFPPADVAQ ILDSAVTSLQ PCCSQNLPIY 1080 ADIQKCMGII RSQILALIRI *

Sequence ? help Back to Top

Protein Sequence Length: 1101 aa Download sequence Send to blast

MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMERSDSE  120
QESNEGRDQE APQRAQKRSR RKFHNSKFKD MDHNLPDYSP SRFVGSTSDC LSLLKANLPG  180
SEPRVVGKRT PRVPVVHTSD KDIRDKNFSA KPGRKFKMNA DDHVAHEIAL ALTKASQKDK  240
SPRISQSNRA SQGKIGNVSS PAKSDDRMHF IEGTSAQLQG SARDEQDHQG SMGSIDVDNL  300
RSGSTLRDRE VFGTLDIQKK GLRSYGKNVI AETGNDHLDD MKEACSGTEE QNSSAFSNKH  360
GFENPKQLIS KGTKKRNKKI LFDEDENAAF EALNTLADLS LTMPEPFLDN DNRGADINTS  420
SAKSKGNNSF GGDEDTNIKF ISSDTDRGGN VGTIPDSEDK TGIRKRKPKS LPFCMENLKM  480
EPHLYHTGNF PNSEDVEDAN KSLSKGHHKE GEHVNASTLN VSRESAGDFS SKNRNWRKRD  540
LPKSVNLKDT NYSVQVESGR PTDGILNLKA KLANCLSWRK SQRWCTFEWF YSAIDYPWFA  600
RREFVEYLDH VGLGHIPRLT RVEWGVIRSS LGKPRRFSQQ FLKEEKEKLN QYRESVRNHY  660
AELRLGAREG LPTDLARPLS VGQRVIAIHP KTREIHDGSV LTVDRSRCHV QFDKPDLGVE  720
FVMDIDCMPL NPLENMPASL AINKLSENHN GVKLNGLTSH HSASLHPNGN IDNPDDPLLR  780
PWSDSLVDQS KKTVKDNIPS SNVQAKARSS GPISGQEAAD QPSFLAQSKE ADVKALYEMT  840
CALDKKEAIV SEFKRMNDEV EENKRSDSLF EVPESFSKRY ASVLVQLDEV NDQVTLALRC  900
LRQRNTYQGS FGLISAKPAL VDIGVVTGTL NYSTSDTSKQ ETHVPEIVEG STSKAQKMVN  960
AAMKAMSSLK SSVHDGVEEA IDYLNTQLSQ EEPNVSTDRS VPVPATPGKQ RAINSADPKM  1020
NTTPDSNAQI PSELITNCVA TLFMIQKCTE REFPPADVAQ ILDSAVTSLQ PCCSQNLPIY  1080
ADIQKCMGII RSQILALIRI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826074.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X2
TrEMBL	A0A2I4F360	0.0	A0A2I4F360_JUGRE; protein ALWAYS EARLY 3 isoform X2
STRING	cassava4.1_000519m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Kalax.0058s0060.1.p