PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 274aa    MW: 30041.6 Da    PI: 6.9773
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.4e-3088141155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Kalax.0057s0011.1.p  88 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 141
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05985144IPR017930Myb domain
SuperFamilySSF466892.42E-2085145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-3187146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-2489141IPR006447Myb domain, plants
PfamPF002499.8E-891140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKEDESNWLS RWEEQLPSPD ELMPLSQTLI TPHLALVFDL HNPNNPQSTP LPAPTPSSLA  60
HPSSSEFENS GDLGSGAGGD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ  120
LMSVDGLTRE NVASHLQKYR LYLKRMQGHS NGGGGLASSD PATDHLFASS PVPAHFLHPV  180
RPGQDHFMPF VAPPQSGRPI WVTHPQLQQQ FHQQRQVGHF GSPHGNGQFE HSFMTRQQAG  240
PRMGAPPPYG EDVESGEANG RRTVLTLFPT GDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-3288144157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036386.11e-117PREDICTED: transcription factor PCL1
SwissprotO222101e-65MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A059A3P31e-116A0A059A3P3_EUCGR; Uncharacterized protein
STRINGXP_010036386.11e-116(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-87G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]