PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 324aa MW: 36188.4 Da PI: 6.9487

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0055s0097.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ + + g+ R++k+c++rw +yl Kalax.0055s0097.1.p 14 KGPWTPEEDQKLLAYIEQHGHGSWRSLPLKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.2	6.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Kalax.0055s0097.1.p 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.138	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.97E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.891	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.52E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRSL PLKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLMKMG 120 IDPVTHKPKS DALVSNNSSC SSNLIDGHSS KSAANLSHMA QWESARLEAE ARLVRESRLR 180 SNPFQTPHHQ QLLLPDTNPN HEITGGLLFG GPADLESPSS TTLSFPGPVV SVSESRCSEY 240 LLESSCGEVK ETWTPESLRE DHEDHHAFNN NVIHNNNSAE AGFTELLLSN TAGGCQEDED 300 NKNYWNTILD LVNTSPAHDS PIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624157.1	1e-129	PREDICTED: protein ODORANT1-like
Swissprot	Q9LXF1	1e-113	MYB16_ARATH; Transcription factor MYB16
TrEMBL	A0A1U8K8S2	1e-127	A0A1U8K8S2_GOSHI; myb-related protein 306-like
TrEMBL	A0A2P5Q0W0	1e-127	A0A2P5Q0W0_GOSBA; Uncharacterized protein
STRING	Gorai.011G122800.1	1e-127	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-113	myb domain protein 16

Link Out ? help Back to Top
Phytozome	Kalax.0055s0097.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]