PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0054s0134.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 511aa    MW: 56465.2 Da    PI: 5.7414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0054s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.22.5e-4741302127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          p+G+rFhPtd+elv++yL+ k +g++ ++ + i+evd++k+ePw++p + + +++++ewyfF +rd+ky +++r+nratk+g+Wk tg+d
  Kalax.0054s0134.1.p   4 PVGYRFHPTDQELVNHYLRLKNQGSERDV-SNIREVDVCKWEPWEIPgHlCSDSDDQEWYFFGRRDSKYGKSTRSNRATKDGFWKPTGRD 92 
                          89************************999.77***************6346677899********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          + +++++++l+g+kktLvfykgra+++++t+Wvmhey 
  Kalax.0054s0134.1.p  93 RFIKTASKKLIGTKKTLVFYKGRAQRAHRTRWVMHEYL 130
                          *************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-492143IPR003441NAC domain
PROSITE profilePS5100547.0713149IPR003441NAC domain
PfamPF023652.4E-254129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSTPVGYRFH PTDQELVNHY LRLKNQGSER DVSNIREVDV CKWEPWEIPG HLCSDSDDQE  60
WYFFGRRDSK YGKSTRSNRA TKDGFWKPTG RDRFIKTASK KLIGTKKTLV FYKGRAQRAH  120
RTRWVMHEYL ASADKHNPQA FVLYLLKKKE DENPEISNSD DKSSPSVSLL INNNAPSYSP  180
STPTLLRSSG NFSSSDQTRV NQNWKEQEVS SHAQNVHSPC LEDDIDFQAF ERFFDGQPPT  240
WDGLDRMLPA IPLSGVYPNQ GPTHMTARYI NVSSNDHGVT QFSNSKSRQE AVHNIDDVVS  300
SVFTLNTLTL DAESGTETDN DVPQSLFDEE AVYGGSAFLS DSESSNAEFY NDMILAHEVS  360
LSTNNSGHFE LQAGEDGSIK RIASGRIHGS ANNPRTGTNS EVPAQASSKK ERSYVPPKKL  420
ESKIVEAVSD DDSSEGPAKS SAILEVSGNE SGGAVGSLGR EGRGTGFMHY AENPRVNNGT  480
TPPSNYILNL IMGIFLTGVI MGEVLFGLVT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-31112913138Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-49NAC 014