PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0053s0119.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 601aa    MW: 66678.1 Da    PI: 6.5714
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0053s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093834201954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kalax.0053s0119.1.p 383 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 420
                          554459******************************88 PP
2BELL125.42.2e-40245316172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          er++ q+k +kLls+l+eVd+rYkqy++q+q+v+ssF++vag g++kpYt+lAl++iSrhFrcL+dai++qi
  Kalax.0053s0119.1.p 245 ERNDFQIKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDTVAGNGASKPYTALALQTISRHFRCLRDAITNQI 316
                          68999******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-55164314IPR006563POX domain
PfamPF075267.1E-50170313IPR006563POX domain
PROSITE profilePS5007112.195361424IPR001356Homeobox domain
SMARTSM003898.3E-10364428IPR001356Homeobox domain
CDDcd000863.04E-12364425No hitNo description
SuperFamilySSF466893.51E-17365431IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-29367430IPR009057Homeodomain-like
PfamPF059204.0E-18381420IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MASYYPTTGT QRDAATMLYL KENYPGSYPE AQGNMMMMNY PPSYVTAYSN TLGSNAQVQQ  60
DSEIPSLAGS EPNQHPQQEM MSSLGEWRDG RNEVMVMRPV GSNCHSQGLS LSLGTQIPLG  120
IQAPPIQFRN LFLGPNASGD GGSIRDDENS LDKTDNNQST FGMSCISRPI SNSRYLKVAQ  180
ELLDEVVNVK KALTQPDFEK NPNKHDLKRK GSKDGGGVSN EHSAGEPPDP QESAGKSVNE  240
LSTAERNDFQ IKLTKLLSML DEVDRRYKQY YHQMQIVVSS FDTVAGNGAS KPYTALALQT  300
ISRHFRCLRD AITNQIQATR KSLGDQDARG SGKGVGISRL RFVDQQLRQQ KALQELGMMQ  360
QHTWRPQRGL PESSVSVLRA WLFEHFLHPY PKDSDKIMLA RQTGLTRSQV SNWFINARVR  420
LWKPMVEEMY KEEAGEAEID SNSSSDQTPR GGNKDDTRNS DNRPEEEMPQ QSTTCNLPAV  480
DMARPSHGGG AAFQNGPQGE TANNFRLIQS GNRFMDGSAA AYQHISELGR FGNNSGVSLT  540
LGLQNYEGGL LPMSSEPHRN FIAVRSRDMY NPATNSIQQE PPDCEHHRFS SSQLLHDFVA  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16370428563Homeobox protein Meis2
3k2a_B8e-16370428563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920729.10.0BEL1-like homeodomain protein 6
RefseqXP_023920730.10.0BEL1-like homeodomain protein 6
TrEMBLF6I1B00.0F6I1B0_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00050.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-130BEL1-like homeodomain 6