PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0115.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 683aa    MW: 75557.9 Da    PI: 5.5312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14484530455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0052s0115.1.p 484 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 530
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-5513197IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.76E-19480548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841480529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-12484529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-16484534No hitNo description
Gene3DG3DSA:4.10.280.109.7E-19484547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17486535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MTAVPPGSGG GRLQSLLQSS VQSIQWTYSL FWQLSPHNGN LVWADGYYNG AIKTRKTIQS  60
MEVSAEEASL QRSQQLRELY DSLSTGDQAS EAPARRPSAA LSPEDLTESE WFYLMCVSFS  120
FPLGVGLPGK AYARRQHVWL TGANEVESKV FSRAILAKSA RVQTVLCIPL VDGVVEFGST  180
ELIHEDLGLV RHVKTFFNDY NQSQHTPPPK PALSGHSTSN PTASSDHFHS QPLLAMYNAG  240
MSSNNNHANS HNQNDEENEN EEEEEEGPGL DSEAETARVS GRVGAEVSEF MHMEMSDQDI  300
RVGSPEDASN NLEPDVNLLS ASRFKNNKDD HFTSESYKIE SARRWALMQD QMRSGAVQIQ  360
PPPFSETTPL LEDLTQEDSH YSHTVSSILQ NQRQPPLPDS SAGILILSAD SAFALHGDQV  420
TATTIIGGAG AGSQWLLKYI LFTIPYLHAK YHEENEPSKS VDMSEAAQRL KKGAGTPQED  480
MSANHVLAER RRREKLNERF VILRSLVPFV TKMDKASILG DTIEYLKQLR RKIQDLEVKT  540
KQMEVEQRSG LTSQERTWSG SGSDKKKMRA VEGTGTPKPV KVVEPPPPRA VEPLAIMDAN  600
TVQVSIIETD ALVELQCPHR EGLLLDVMMK LRELRIEVTA VQSSVTDGSF VAELRAKVKE  660
NVNGKKMKIA EVKRAICEII PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-231219812193Transcription factor MYC3
4rqw_B5e-231219812193Transcription factor MYC3
4rs9_A5e-231219812193Transcription factor MYC3
4yz6_A5e-231219812193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488493ERRRRE
2489494RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGEOX947960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-77bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]