PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0062.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 650aa    MW: 71368.4 Da    PI: 6.3277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000414825191355
                          HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          R+ i +++ eLrel+P+ a      K s  + Le+++++++ +q
  Kalax.0052s0062.1.p 482 RQLIQDRIKELRELIPNgA------KCSIDSLLERTIKHMQFMQ 519
                          67799************77......7777779999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-285156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.741469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-5482530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGADLQLLLR DLCSNTGWHY AIYWKLRLHH SRMVLTWEDA YFSSCGHNES QDYLPSGSYL  60
HDSLKLAMTA MSYDVYPFGE GIIGEVAASG NHRWVFGDKH VATSSSFVQE HSGWRSQFSA  120
GIKTVAIMAV APHGVVQLGS FYKIKENMKL VDQIKHSLSA LQISSVDVGA AGVQSNGGAL  180
GLPVDTDCRM LLHQESDTEQ LGQIYSKLMD GITPQLEVRM DSDASGISPT CDMDSVHALH  240
NLAFPFDDSG SGNSFPFHDS SNCESSDRVN FDLLDQYQDL HPSSHMNEKL DLQASLSHSE  300
SPAASLKFST GCELHEALGP AFSKHLSNYG KRMEAGKVKP AVEFSEGMGS TSSQLAPSSG  360
SEHLLEAVVA NILNNIKDYK SDRACKSMQS VLTTDYMPEA SSYGDHRNLS ADPSSSYPTS  420
GKDDIPHCLR TSEAYFTRSP TMLSSTCVSS CTEPVSKSSE TSKGNKKRAR PGEGSKPRPR  480
DRQLIQDRIK ELRELIPNGA KCSIDSLLER TIKHMQFMQS MSEHADKLKQ CAESKMQSKD  540
AVEGSSSHEQ GSSWAVEVGG HLKVCRILVE NVNMNRQMLI EMLCEECSHF LEIAEVIKSL  600
GLTILKGATE ACGDKTWICF LVEAQKNKSM QRLDILWSLV HVLQPKSSA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473806.11e-180PREDICTED: transcription factor bHLH155-like isoform X4
SwissprotP0C7P81e-100LHWL1_ARATH; Transcription factor EMB1444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.19e-88conserved peptide upstream open reading frame 7