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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0052s0052.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
bHLH |
| Protein Properties |
Length: 455aa MW: 49597 Da PI: 8.3568 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0052s0052.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.6 | 4.4e-13 | 305 | 351 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq
Kalax.0052s0052.1.p 305 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 351
799***********************66......*****************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MGDKFRVSDE ERAAVEAVVG AGASHFLTSS ASETGFRDLA ASSNCVDSSV HHALSRLVAG 60
DSDWNYLVFW RASRSKGNGS ALVWGDGHCG GANAQNPRLS EEEKLRREKV VRLIQKWFGK 120
SVNKNGLLSN LELFYLVSMC YSFSSESASG PGQVYKYSRA VWAVDKCQEQ YESRAHLAKL 180
AGLKTVVFVP VKEGVVEIGS VAAVAEEKKV LQMIEGLFGC PESVLPKIFG QDLSLGGSNS 240
RSMSISFSPK VEEGGGIGVS QFYGSTVSGQ GGGLGFEQFR DEEGDDRKPR KRGRKPANGR 300
EQPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAISYITDL QSKIRMLETE 360
KDAPKAQAQA QAVPEFEFQA RQDDAIVRVS HPLDGHPVSR VIKALRENQM TPGPEMCDVS 420
ITNNDMVVHT FSIRTQGGAA AEHVKEKLLA ALSK*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_B | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_E | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_F | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_G | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_I | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_M | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| 5gnj_N | 2e-29 | 299 | 369 | 2 | 72 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 286 | 294 | RKPRKRGRK |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
Plant Signal Behav, 2014. 9(1): p. e27639
[PMID:24394987] - Fonseca S, et al.
bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
PLoS ONE, 2014. 9(1): p. e86182
[PMID:24465948] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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