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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0052s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 733aa MW: 80092.1 Da PI: 6.6333 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.1 | 1.4e-10 | 292 | 348 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Kalax.0052s0018.1.p 292 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 348 57*******************4444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 46.6 | 8.5e-15 | 391 | 442 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Kalax.0052s0018.1.p 391 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 442 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-8 | 292 | 348 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-18 | 292 | 358 | No hit | No description |
SuperFamily | SSF54171 | 4.05E-14 | 292 | 358 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.016 | 293 | 356 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-11 | 293 | 357 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-22 | 293 | 362 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-6 | 294 | 305 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 391 | 442 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 391 | 451 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.08E-24 | 391 | 450 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-18 | 392 | 450 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 392 | 450 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-33 | 392 | 456 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-6 | 432 | 452 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MASMNNWLAF SLSPQHQHQH HQGDQHHSRL QGFHSDDMSA ATDECFDLSS SSARPQPPHP 60 FGVLDEASAD WNSAENGCYK TTTSEMSTLM GSSCNNNSNN GSQSLQDQHL PKLENFLGSH 120 SFSNNHYHHH STAAGDYMFS TESMPETAAH NNNNNQAFNN TNNSIGLSMI KTWLRSNQAA 180 GTGQMQQPLQ QQIPNSNEIF NNNMSSGDGD SGREALCGVD NNNTNNKALT GAQTLSLSMS 240 TGSQSNSSAP LPLLDGGDGV DMQQKTALDS QTGAVVETVP RKSLDTFGQR TSIYRGVTRH 300 RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPISSY 360 EKELEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL 420 GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MNRYDVNSIL ESSTLPIGGA AKRLKDAEQA 480 IELTGAMEGL ISQRSALNHD SVGSHLSDGM SYGSSGQWPT IAFHHPPYNN AMHQHYSPYA 540 RVWCKQEQDS TSEGTTHQSF QDFHQLQLGS SGATHNFFQQ PTTSVLHNLM SLDSASMEHS 600 SGSNSVIYGN GGGYGASVNN NGGFVMPVGS ALMGNEDNNS EVKASGYATE NIYGNTNAYN 660 QARTLYYLQQ QQQQQSLFKG GGYDQDSGCN SWVPTGIPCS GPKGTGGNTN NTAATCHVAG 720 NQPFTVWNET WK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023872279.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-140 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A2C9USA6 | 0.0 | A0A2C9USA6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002713m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-131 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0052s0018.1.p |