PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0050s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 605aa    MW: 65283.6 Da    PI: 6.2701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0050s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000192042123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H+r+H
  Kalax.0050s0001.1.p 20 HVCTLCGKGFRSGKALGGHMRVH 42
                         79*******************99 PP
2zf-C2H211.60.0008497115321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          Cp+C + F+++  L  H+r
  Kalax.0050s0001.1.p  97 CPICRRDFPSNKALFGHMR 115
                          ******************8 PP
3zf-C2H211.70.00081405427123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+F+++  L  H ++H
  Kalax.0050s0001.1.p 405 YKCTTCSKTFTSHQALGGHKSSH 427
                          9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-41943IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00632042IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-82042IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-72042No hitNo description
PROSITE profilePS5015711.1152047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-790117No hitNo description
SMARTSM003550.08995117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.62195122IPR007087Zinc finger, C2H2
PfamPF139122.5E-696119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-5402429No hitNo description
PfamPF139129.2E-9404428IPR007087Zinc finger, C2H2
SMARTSM003550.034405427IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24405432IPR007087Zinc finger, C2H2
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
SMARTSM003553.1482504IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-7482506IPR007087Zinc finger, C2H2
PROSITE patternPS000280484504IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MPERSCESDS MRDKEVEEEH VCTLCGKGFR SGKALGGHMR VHAQRHRSDQ LKTSVVDRAA  60
ADGSCDIDVD EEDDDDDEVK RSCDELQMKD GGGKPICPIC RRDFPSNKAL FGHMRCHPER  120
KWRGIQPPVY SSSSTVSDVQ AHSSSSSSHK SDHNDDDPLK SGVTDLEKDL LNFGWGAKAC  180
RGREGTVKSI APEQAAGVQN LILLSRGGVD GKSEVGPEIK SQPLPAGPAI RDSTNFTRKL  240
KLCGAEVESR GRVDHESQKR RRRKRKTSQV LTTEEVSGLT NSGKKSKLAD EEVEGSHDDG  300
TQDLMIVESN PLHQLSGRRP PMISATEAGA DVMPLEKVDA SPHGYNAAEL MQADLIETKK  360
TQKVRKYLMI SDLKPMSANL PHSSPVNPPP LHQDINTEVS DNERYKCTTC SKTFTSHQAL  420
GGHKSSHNKL RNPQVFRTDL PHPDSFTTQG GGSGNVDAGA SHISGLIMAA AASAATPVHP  480
MHQCNVCFKI YPTGQALGGH KRLHCSLTTN KTLPLPPPSI VIQEPAEAAA SFHPPAPPLA  540
QASDNDHGVV GRFDLNELPA VEDEDDQHAA VIQPVDNIAA QPQEAAGDDK DAHEPGDSPA  600
ALDY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251262RVDHESQKRRRR
2257264QKRRRRKR
3258263KRRRRK
4259265RRRRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-17C2H2 family protein