PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0048s0034.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 1652aa MW: 185065 Da PI: 5.1162

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0048s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	1.9e-18	23	78	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++++++yps++ r eL++kl+Lt+rq ++WF+ rR k+kk Kalax.0048s0034.1.p 23 PKRQMKTPFQLETLERAYAEDMYPSEAVRLELSEKLKLTDRQLQMWFCHRRLKDKK 78 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-17	4	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.15E-16	15	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.001	19	79	IPR001356	Homeobox domain
SMART	SM00389	2.8E-18	21	83	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-16	23	78	IPR001356	Homeobox domain
CDD	cd00086	8.17E-15	24	78	No hit	No description
SMART	SM00571	2.7E-20	509	568	IPR018501	DDT domain
PROSITE profile	PS50827	16.521	509	568	IPR018501	DDT domain
Pfam	PF02791	2.2E-16	510	565	IPR018501	DDT domain
Pfam	PF05066	4.4E-14	692	759	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.4E-9	900	943	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-14	1056	1128	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1652 aa Download sequence Send to blast
MESGSEGENN EFGAERHGGG SKPKRQMKTP FQLETLERAY AEDMYPSEAV RLELSEKLKL 60 TDRQLQMWFC HRRLKDKKGA PPSTPAKKAT KKPVAEPPPA SPEEQMDVGD QFSEQGSGSG 120 PDSDSDMESS PASYRETRNL SSLQYVNSPW GHESPQTIFE RRIVAAIEQQ LGESLREDGP 180 ILGIEFESPP PDAFTSPPEA RSGHRRYGSP LDREGYQHSG SRSKKSLAAC DGAEAPQFYD 240 YTFESRSSSI PNFTSVQGHS KMPKQGRKVA PAVMDYEFTP RSDRFLETEA DNLFDGQTSY 300 GAESHHAGSG GKNLNVDVLR KDKKRKAEET KTLREADEKR IRKELEKQEI LRQKREEQLR 360 KEMEKVDRER KKEEERLMRE KQREEERILR EEKRERERRE KFLQRESLKA ERLRQKEELR 420 KEREALRLKS QLEKATARRI IRESMGYIED ERLELMELAV SSKGLESIAA LDYDSLQGLE 480 SFRDSLMEYP PKSVKLKKPF GIQPWLDSDE NIGNLLMVWR FFTTFADVLE LWPFTLDEFV 540 QAFHDYDSRL LGEMHVSLLK LMVKDIEDAA RAPQMASGTS QAAAVNPEGG HPHIVEGAYA 600 WGFDVRNWKQ HLNASTWPEI LRQLALSAGF GPQLKKKKTA KVESLDDIKE AKGSEDVVSI 660 LRNGSAAQNA IVKMQHRGLA LPRKPRHRLT PGTVKFAAFH ILSLEGSDGL TITELAERIQ 720 KYGLRDLSSS KKPEASIGVA LTRDTTLFER VAPSTYCVRP AYRKDPADAE SVLAAAKEKL 780 QALGNANLPG EDVDGVERDE DSECDGAADK ADELGTLSLV NEIGMAFDDE PGCLGNGNDN 840 SSDDGVINIS NELDKESPFI SSNRTDMNGH GLSTDMDVAG MDMHRRNPDE ESLEVDESRS 900 GESWVQGLAE GDYSALSIEE RLNALVALIG LANEGNTLRA VLEGRLEAAN ALKKQMWAEA 960 ELDKKRAKDG ILTANPKPDA DVKPGNGGYQ SPMLVDEINE TGNNAGSLPN GNIPAIQDAF 1020 SNAEFASEQH KYSVEKSRIQ LKSLISHRAE ELYTYRHLPL GLDRRHNRYW QFAASASKHD 1080 PGTGRIFVES QDGHWRLIDT AESFDALLSS LDTRGVRESN LQHMLKRIES SFKGNLETNS 1140 SQAVKCGSRD TNSSPDCPSD ADSPRSMICA SAGSPECSSS FRIELGRTSV ERMSAFRKYL 1200 EFEKWAWREC FELETLCNLK YGKRRCDPLL GHCDLCLDMY LYEDPHSHSC LQKPKNSDDD 1260 MLECDEHENG LVQYSPLPLG VRLLKGLLSL VEAFIPLDAL QYFWEGEHRK AWGMKLYASS 1320 SIKDLFKALV SLEAAVRRDC LSPSFKTTRE LADAYSSFEH KFCDFSSPET LPELPWVPQT 1380 TAAAVLRLLE LEASILLLDQ DDDSFEFKEP PVSVAPGSPS RPLHCLVGKS SEANHKRPAG 1440 KFSDGESGYL DSMPENFGGK VRRLGPGGKL QKATNRSNPA ADKSSEHDRR GTQGEISGWG 1500 SRIVRGKRTV KSAAKETQSN QLQNRNANAK PPRFGAHSQS LRSGEALMIQ ELGQSPMESD 1560 ADDDSDRDDS HSLESEHENW GLNFRPVSGK LDESSSEEDD DDDNNHDASD YHHDQRNFRD 1620 SNMDQQTQDR KSRKFDDQVG EDSESDHDDS E*

Sequence ? help Back to Top

Protein Sequence Length: 1652 aa Download sequence Send to blast

MESGSEGENN EFGAERHGGG SKPKRQMKTP FQLETLERAY AEDMYPSEAV RLELSEKLKL  60
TDRQLQMWFC HRRLKDKKGA PPSTPAKKAT KKPVAEPPPA SPEEQMDVGD QFSEQGSGSG  120
PDSDSDMESS PASYRETRNL SSLQYVNSPW GHESPQTIFE RRIVAAIEQQ LGESLREDGP  180
ILGIEFESPP PDAFTSPPEA RSGHRRYGSP LDREGYQHSG SRSKKSLAAC DGAEAPQFYD  240
YTFESRSSSI PNFTSVQGHS KMPKQGRKVA PAVMDYEFTP RSDRFLETEA DNLFDGQTSY  300
GAESHHAGSG GKNLNVDVLR KDKKRKAEET KTLREADEKR IRKELEKQEI LRQKREEQLR  360
KEMEKVDRER KKEEERLMRE KQREEERILR EEKRERERRE KFLQRESLKA ERLRQKEELR  420
KEREALRLKS QLEKATARRI IRESMGYIED ERLELMELAV SSKGLESIAA LDYDSLQGLE  480
SFRDSLMEYP PKSVKLKKPF GIQPWLDSDE NIGNLLMVWR FFTTFADVLE LWPFTLDEFV  540
QAFHDYDSRL LGEMHVSLLK LMVKDIEDAA RAPQMASGTS QAAAVNPEGG HPHIVEGAYA  600
WGFDVRNWKQ HLNASTWPEI LRQLALSAGF GPQLKKKKTA KVESLDDIKE AKGSEDVVSI  660
LRNGSAAQNA IVKMQHRGLA LPRKPRHRLT PGTVKFAAFH ILSLEGSDGL TITELAERIQ  720
KYGLRDLSSS KKPEASIGVA LTRDTTLFER VAPSTYCVRP AYRKDPADAE SVLAAAKEKL  780
QALGNANLPG EDVDGVERDE DSECDGAADK ADELGTLSLV NEIGMAFDDE PGCLGNGNDN  840
SSDDGVINIS NELDKESPFI SSNRTDMNGH GLSTDMDVAG MDMHRRNPDE ESLEVDESRS  900
GESWVQGLAE GDYSALSIEE RLNALVALIG LANEGNTLRA VLEGRLEAAN ALKKQMWAEA  960
ELDKKRAKDG ILTANPKPDA DVKPGNGGYQ SPMLVDEINE TGNNAGSLPN GNIPAIQDAF  1020
SNAEFASEQH KYSVEKSRIQ LKSLISHRAE ELYTYRHLPL GLDRRHNRYW QFAASASKHD  1080
PGTGRIFVES QDGHWRLIDT AESFDALLSS LDTRGVRESN LQHMLKRIES SFKGNLETNS  1140
SQAVKCGSRD TNSSPDCPSD ADSPRSMICA SAGSPECSSS FRIELGRTSV ERMSAFRKYL  1200
EFEKWAWREC FELETLCNLK YGKRRCDPLL GHCDLCLDMY LYEDPHSHSC LQKPKNSDDD  1260
MLECDEHENG LVQYSPLPLG VRLLKGLLSL VEAFIPLDAL QYFWEGEHRK AWGMKLYASS  1320
SIKDLFKALV SLEAAVRRDC LSPSFKTTRE LADAYSSFEH KFCDFSSPET LPELPWVPQT  1380
TAAAVLRLLE LEASILLLDQ DDDSFEFKEP PVSVAPGSPS RPLHCLVGKS SEANHKRPAG  1440
KFSDGESGYL DSMPENFGGK VRRLGPGGKL QKATNRSNPA ADKSSEHDRR GTQGEISGWG  1500
SRIVRGKRTV KSAAKETQSN QLQNRNANAK PPRFGAHSQS LRSGEALMIQ ELGQSPMESD  1560
ADDDSDRDDS HSLESEHENW GLNFRPVSGK LDESSSEEDD DDDNNHDASD YHHDQRNFRD  1620
SNMDQQTQDR KSRKFDDQVG EDSESDHDDS E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1218	1224	LKYGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914497.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
TrEMBL	A0A2N9G746	0.0	A0A2N9G746_FAGSY; Uncharacterized protein
STRING	XP_002509429.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Kalax.0048s0034.1.p