PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0044s0067.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 26071.5 Da PI: 6.3047 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.7e-19 | 65 | 117 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq+ Le Fe++r++ ++++++LA++lgL+ rqV vWFqNrRa+ k Kalax.0044s0067.1.p 65 KRKLTEEQTALLELSFENDRKLETDRKKRLAAELGLEPRQVMVWFQNRRARLK 117 4589***********************************************87 PP | |||||||
2 | HD-ZIP_I/II | 100.5 | 1.5e-32 | 64 | 155 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr+l++eq +lLE sFe+++kLe++rK++la eLgl+prqv vWFqnrRAR k ++lE ++++L++++d + +++++Le++ L ++l Kalax.0044s0067.1.p 64 RKRKLTEEQTALLELSFENDRKLETDRKKRLAAELGLEPRQVMVWFQNRRARLKCQKLEDEFAKLRSSHDDVLAQKTQLETQIFVLDQKL 153 8**********************************************************************************9999999 PP HD-ZIP_I/II 92 ke 93 k+ Kalax.0044s0067.1.p 154 KN 155 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.261 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-15 | 62 | 123 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-16 | 64 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.66E-15 | 64 | 117 | No hit | No description |
Pfam | PF00046 | 2.5E-16 | 65 | 117 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-18 | 66 | 124 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 8.0E-6 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAYCQRSLYG LETYDEGDYS MLLTSQELPC HTAEVEFTIP SGEKRQIRRR RKKNKGDENG 60 SVLRKRKLTE EQTALLELSF ENDRKLETDR KKRLAAELGL EPRQVMVWFQ NRRARLKCQK 120 LEDEFAKLRS SHDDVLAQKT QLETQIFVLD QKLKNVEKEL ERLSIWEEVS PAVHSTPTTS 180 SLSAKNQPID GSMFSQESSM QQYLENGFCF QLEDYSNMLT WFG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 66 | RRRKKNKGDENGSVLRKRK |
2 | 50 | 66 | RKKNKGDENGSVLRKRK |
3 | 62 | 67 | LRKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1P8B6F4 | 6e-39 | A0A1P8B6F4_ARATH; Homeobox protein 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 2e-37 | homeobox 53 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0044s0067.1.p |