PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0044s0026.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 687aa MW: 76803.4 Da PI: 6.2677

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0044s0026.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.2e-10	637	683	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 rW+ E++ + +v+++G+g+Wk I + + + Rt+ ++k++w+ Kalax.0044s0026.2.p 637 RWSVLEEDTIRAGVQRYGKGNWKVILNAYPdifEDRTEVDIKDKWRR 683 9********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.26	630	686	IPR017930	Myb domain
SuperFamily	SSF46689	3.9E-12	632	685	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-4	634	686	IPR001005	SANT/Myb domain
CDD	cd11660	1.44E-16	636	686	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-11	637	685	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-9	637	683	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MGTSCILDKW MVEFGVRSRR HDRLVVKMLS LVPQLRDDVG LKKMVLFRAI DSEVDEGSVS 60 EKTLDVLEIA FELDRKQGLD VLESMKAAYC AVAVDCVARF AKSVGEGDKY FKAVKRVWRK 120 RIGRLFSLNV GLVSEQLDTW RNTVESAIWD DNVRDKLFVT NTRYEALIAT KGYLDEAWKT 180 VGPSFLELLA SSTLGKSFVE AQSLCLPRTS EPIEGGSQRP FDTPDPDIRT EKCDGEVLKG 240 PCDPSSPISS PMLKNKDRDD VPNILTQNLG FNSKNPNVEH REEVSEASLC AHTVNLHPDE 300 TVKLAVFGTA EEQNLPPTSR GLTLDQSENV EPVHLKAKGA EEADLPLPGV SANNSFDNDD 360 HLKGADTNVV KEKEADMPSS CPHGNLPSQS NSKVLYKEDT NKLRGRSKHA GRFKKRFKRV 420 RINDTDDVDL EESDNQYDLL PENTVAKIHE ELKSSSIELH AVVKDPLPGA LHVAEVVISD 480 VSRNCIPREI PVASITNMDT LNSCDVEEEK GKDKISTSHA IKASASSMEG SAMNLKSNQG 540 HERDPRDAAI NASTPEAVGD GDKNLQNEGS GHENRQKRVN LWERNCSAHT YKWDDSVDGS 600 PGESPRLRTL RTPRPYVNSP LKKYESLKFA RRRKIKRWSV LEEDTIRAGV QRYGKGNWKV 660 ILNAYPDIFE DRTEVDIKDK WRRMTN*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MGTSCILDKW MVEFGVRSRR HDRLVVKMLS LVPQLRDDVG LKKMVLFRAI DSEVDEGSVS  60
EKTLDVLEIA FELDRKQGLD VLESMKAAYC AVAVDCVARF AKSVGEGDKY FKAVKRVWRK  120
RIGRLFSLNV GLVSEQLDTW RNTVESAIWD DNVRDKLFVT NTRYEALIAT KGYLDEAWKT  180
VGPSFLELLA SSTLGKSFVE AQSLCLPRTS EPIEGGSQRP FDTPDPDIRT EKCDGEVLKG  240
PCDPSSPISS PMLKNKDRDD VPNILTQNLG FNSKNPNVEH REEVSEASLC AHTVNLHPDE  300
TVKLAVFGTA EEQNLPPTSR GLTLDQSENV EPVHLKAKGA EEADLPLPGV SANNSFDNDD  360
HLKGADTNVV KEKEADMPSS CPHGNLPSQS NSKVLYKEDT NKLRGRSKHA GRFKKRFKRV  420
RINDTDDVDL EESDNQYDLL PENTVAKIHE ELKSSSIELH AVVKDPLPGA LHVAEVVISD  480
VSRNCIPREI PVASITNMDT LNSCDVEEEK GKDKISTSHA IKASASSMEG SAMNLKSNQG  540
HERDPRDAAI NASTPEAVGD GDKNLQNEGS GHENRQKRVN LWERNCSAHT YKWDDSVDGS  600
PGESPRLRTL RTPRPYVNSP LKKYESLKFA RRRKIKRWSV LEEDTIRAGV QRYGKGNWKV  660
ILNAYPDIFE DRTEVDIKDK WRRMTN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	2e-13	TRF-like 5

Link Out ? help Back to Top
Phytozome	Kalax.0044s0026.2.p