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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0041s0099.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
NAC |
| Protein Properties |
Length: 346aa MW: 39366.4 Da PI: 7.571 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0041s0099.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 123.6 | 1.7e-38 | 2 | 101 | 32 | 129 |
NAM 32 evikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118
evi+e+d++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+k
Kalax.0041s0099.1.p 2 EVIREIDLNKIEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQK 90
579*************963433332556*************************************9.8899******************* PP
NAM 119 tdWvmheyrle 129
tdW+mheyrle
Kalax.0041s0099.1.p 91 TDWIMHEYRLE 101
*********85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MEVIREIDLN KIEPWDLQER CRIGSTPQNE WYFFSHKDRK YPTGSRTNRA TSAGFWKATG 60
RDKCIRNSFK KIGMRKTLVF YRGRAPHGQK TDWIMHEYRL EDIDDAQSDS SEDGWVVCRV 120
FKKKNLFKTG NQGSSSTRLH TEHHHHQIPN ASIQLNSLRS FSSNSDDQQQ YFLQRHSQLH 180
TSSLNTSQQA ASAGNNNLEG QHIYKPTELA LHYSHLPMPH YNSLPQVPHT SLIPSSAHAY 240
SNSAHGLGSD ESPVMVKQFM SNPRGQCESG SESMRYQQDR GLEDGTCDGA RPDEGLGEWA 300
MLDRLVTSHQ IAGQQHPGDS DRDTHVNHIN QLSLRSEMDF WGYGK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-40 | 1 | 125 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-40 | 1 | 125 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-40 | 1 | 125 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-40 | 1 | 125 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 7e-40 | 1 | 125 | 49 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 6e-40 | 1 | 125 | 46 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 6e-40 | 1 | 125 | 46 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
