PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0041s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 127aa    MW: 13331.9 Da    PI: 9.6565
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0041s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.6e-141259249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +i + s+r vt++kRr+g++KK   L+ L++  +a i+fs+ g+ y +
  Kalax.0041s0035.1.p 12 PIHDISRRRVTLTKRRQGLFKKMDKLCKLTGCTAAAIVFSTAGRPYSF 59
                         68999**************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-14362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.236363IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-16464IPR002100Transcription factor, MADS-box
CDDcd001202.47E-19460No hitNo description
PRINTSPR004043.6E-11525IPR002100Transcription factor, MADS-box
PfamPF003192.6E-161359IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGTGRKRIEI QPIHDISRRR VTLTKRRQGL FKKMDKLCKL TGCTAAAIVF STAGRPYSFG  60
DLSLFDAFTG SEGQGREDGG GYHLGGSRLG LGRVSEPEGV DGFTGSGGEG GPSTSYSQEV  120
GGGWGW*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A484M0L98e-16A0A484M0L9_9ASTE; Uncharacterized protein (Fragment)
TrEMBLI1GUH52e-15I1GUH5_BRADI; MADS-box transcription factor 45
STRINGBRADI1G27900.14e-16(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-13AGAMOUS-like 61