PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0039s0142.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 297aa    MW: 33504.4 Da    PI: 8.9446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0039s0142.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-05124143120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  Kalax.0039s0142.1.p 124 FSCSVCSKTFNRYNNMQMHM 143
                          89*****************9 PP
2zf-C2H217.98.5e-06209231123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cgk F  k + ++H +++
  Kalax.0039s0142.1.p 209 FSCHKCGKAFAVKGDWRTHEKNC 231
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-5117146No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5124143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367124151IPR007087Zinc finger, C2H2
SMARTSM003550.15124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576678.91E-7189229No hitNo description
Gene3DG3DSA:3.30.160.608.6E-6195229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.829209229IPR007087Zinc finger, C2H2
SMARTSM0035536209229IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQQLSSFTYK SPRSSNQSSY QHQEDTDFIQ LSLSPPGQQR LSKTKQQQPH SHPPSTQTLK  60
ASNTFNSSHT DGSVDRDLHS GSHMERVNNA SDAVGKGSSH SGFIEKPPYW IPSPAQILVG  120
PTQFSCSVCS KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT KLTSTMLRVP CYCCIEDCRN  180
NINHLRPKPL KDFRTLQTHY KRKHGAKPFS CHKCGKAFAV KGDWRTHEKN CGKIWLCVCG  240
SDFKHKRSLK DHVRALGDCH GPQSLEFYDR AIHHEDAEDD EDLHGHGPPC VHGHSQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461198.11e-110PREDICTED: zinc finger protein WIP6
RefseqXP_016674872.11e-110PREDICTED: zinc finger protein WIP6-like
RefseqXP_016704496.11e-110PREDICTED: zinc finger protein WIP6-like
RefseqXP_017617536.11e-110PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-100ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2P5XPQ21e-109A0A2P5XPQ2_GOSBA; Uncharacterized protein
STRINGGorai.013G080100.11e-109(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-100C2H2-like zinc finger protein