PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0038s0121.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 270aa    MW: 28936.3 Da    PI: 4.9196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0038s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-06143165123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +CgksF++   L  H+r H
  Kalax.0038s0121.1.p 143 HECRICGKSFPSGQALGGHMRAH 165
                          78*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551191113IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.67E-792165No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4140165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-12143167IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658143165IPR007087Zinc finger, C2H2
SMARTSM003550.0058143165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
PROSITE patternPS003840165178IPR001531Phospholipase C domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0004629Molecular Functionphospholipase C activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MASHNGSGER SRNSNGSQNN QQDGNGGRQS DDSRDNRERQ PTVIEMIVIV TLVALATGSG  60
TVFHETTTVL EFGVSVPPPS PPPPAPEPEA LYYCWCGRQY QTDGELVQHM ASHNQGVTVP  120
PPDEGCSSSQ SPPKKRRRVE QQHECRICGK SFPSGQALGG HMRAHYEGDL SRPRHAKNNA  180
SPDVAPASSA VSVAIGDHSA SMSVNNDNNI ISYVADNSHD VAPEVEESTV VVGHVDNKAG  240
QASGHRRLDF DLNVKLDEEA EEDDHSDGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-09salt tolerance zinc finger