PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0038s0043.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 27909.2 Da PI: 6.5862

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0038s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	88	142	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R++++++ql++Le+ F+++ ++ +++ LA++l+L+ rqV +WFqNrRa+ k Kalax.0038s0043.1.p 88 KSRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVK 142 79***************************************************88 PP
2	HD-ZIP_I/II	103.2	2.1e-33	90	179	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +rr+s++q+k+LE+sF+ee kL p +Kv+lareL+l+prqva+WFqnrRAR+k+k+lEk y+ L+++++ l e+++L++ev+ L++ lk Kalax.0038s0043.1.p 90 RRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVKSKNLEKMYDELREQFNVLYLEKQKLQHEVHILQTLLK 179 89**********************************************************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-19	58	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-19	73	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.912	84	144	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	86	148	IPR001356	Homeobox domain
Pfam	PF00046	6.5E-17	88	142	IPR001356	Homeobox domain
CDD	cd00086	2.44E-16	88	145	No hit	No description
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MHSPQETGNP SQPDMEWSLP LAEANPSSSA NLPFSVSSAT NNHYPLMPYY PSFNHHHPHD 60 HSAASPEMET REITDMESSG NRQSEEAKSR RRISADQLKT LEKSFQEEAK LRPAKKVSLA 120 RELNLEPRQV AIWFQNRRAR VKSKNLEKMY DELREQFNVL YLEKQKLQHE VHILQTLLKR 180 QVCCNQHVST YEEISVDNTS ATAALPAPPL ADFYSVGEAG ERFQTPHGLP CTQGTPAWAA 240 QLPPEP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-31	homeobox 51

Link Out ? help Back to Top
Phytozome	Kalax.0038s0043.1.p