PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0037s0126.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26278.8 Da PI: 8.5891

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0037s0126.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5e-20	74	128	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F++n++++ +++eeLA++l+L rqV vWFqNrRa+ k Kalax.0037s0126.1.p 74 RKKLRLSKEQSQLLEESFRQNHTLNPKQKEELADRLNLRPRQVEVWFQNRRARSK 128 788899***********************************************98 PP
2	HD-ZIP_I/II	117.4	7.9e-38	74	162	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K+ela +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n++L+keveeLr+ Kalax.0037s0126.1.p 74 RKKLRLSKEQSQLLEESFRQNHTLNPKQKEELADRLNLRPRQVEVWFQNRRARSKLKQTEIECEYLKRWFGSLTEQNRKLQKEVEELRA 162 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-20	52	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.8E-20	60	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.172	70	130	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	72	134	IPR001356	Homeobox domain
CDD	cd00086	1.73E-18	73	131	No hit	No description
Pfam	PF00046	2.3E-17	74	128	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
SMART	SM00340	1.6E-21	130	173	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.2E-9	130	164	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGGVSPTTLT CLDLTISVPG SSSVGDVNMK PLRLVSKRPE PDDNWINIGC PNSSEEAEDN 60 DTDSPKGDHN HPPRKKLRLS KEQSQLLEES FRQNHTLNPK QKEELADRLN LRPRQVEVWF 120 QNRRARSKLK QTEIECEYLK RWFGSLTEQN RKLQKEVEEL RAMKVGPPTV LSARNCEPTP 180 TSSLTMCPRC ERVSSSAAHV DTKPTSGSLP PPPCRIKSRL CSIADSPPPL FSNN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	130	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594183.1	2e-79	homeobox-leucine zipper protein HOX3
Swissprot	Q8S9N6	2e-67	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A2C9UFF9	5e-78	A0A2C9UFF9_MANES; Uncharacterized protein
STRING	cassava4.1_022041m	9e-79	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	7e-70	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Kalax.0037s0126.1.p

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]