PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0036s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 628aa    MW: 67756.2 Da    PI: 7.5603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0036s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30243302159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Kalax.0036s0023.1.p 243 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVAsSCPVRKQVQRCADDMSILITTYEGTHNHP 302
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-32229304IPR003657WRKY domain
SuperFamilySSF1182902.09E-27236304IPR003657WRKY domain
PROSITE profilePS5081128.656238304IPR003657WRKY domain
SMARTSM007741.6E-36243303IPR003657WRKY domain
PfamPF031069.8E-27244302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MSKAKDQAAT GTGRSGAGDE GNKDERDAAD AQIRFKSEEI ISKDDQIEAT KGEMDEVRQE  60
NQRLKMHLER LTTSYHSLWK KFQDIRQQEA TRKANYNNAS TANIASTSLS SQPDLEEHDV  120
SLSLGRTSSS NLKKEVTVKS GEDNHENVSD HGRMSEQGLL ALGLENKQFE ASKMDHTSST  180
EPLTNNTSAD NSLDEEKKED VMGEIWPPPK TLKRSGEDEI DSHHNNGKRA RVSVRARCDT  240
PTMNDGCQWR KYGQKVAKGN PCPRAYYRCT VASSCPVRKQ VQRCADDMSI LITTYEGTHN  300
HPLPAAATAM ASTTSAAASM LISGSSSTSS RPVGLGQSST STPATTTSVG LHGLTYNLAN  360
GMTSSQPRPH QFYIHNNSQI SPSPNTHPTI TLDLTASNPF TSPFANPHFN RFTSSSSYDP  420
SRLFPLKSTS LNFASMDSNP TPTSMSWATN HGSVLSYGNQ YPQSNNRNNH NLGSLTLASR  480
QPHESIYQSF MQKTSAALHH QQQQQHLLPD TIAAATKAIT ADPSFQTALA AALTSIIGGG  540
ASGGGNNNEK VQVSSMENLG QKMKWGDQVS TQRGSGCASS FLNTSSASNA QSSGMMFLQP  600
SSAATAASKS KSTSPSENNN HQDHNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19230304174WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242382.11e-135PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A1U7Z4T21e-134A0A1U7Z4T2_NELNU; probable WRKY transcription factor 72
STRINGXP_010242382.11e-135(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.14e-61WRKY DNA-binding protein 61