PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0035s0125.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 32043.6 Da PI: 4.9925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 216 | 256 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq Kalax.0035s0125.1.p 216 RKRRERINERLKTLQGLVPNG-----TKVDISTMLEEAVQYVKFLQ 256 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.377 | 206 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 206 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 211 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 212 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.89E-12 | 215 | 260 | No hit | No description |
Pfam | PF00010 | 3.8E-8 | 216 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEQLGGGSAM YEGEWSCLSK MYTTTEESDF MAQLLGGFNP PPFAQTLGNA TRNFIDDNGG 60 FADPADDSAS SSFQLTQETS IFFPVCGEDD GEAECGANLS LSVASDPKSP EIKPVSDSAE 120 DKYVASSIKR AGKKSRNAED ATDRRNVKPR KTRKSDSRSE VDKDGATNNS QSSSLTCSET 180 GESSFSHKKS EPALNLNGRT RAGRGSATDP QSLYARKRRE RINERLKTLQ GLVPNGTKVD 240 ISTMLEEAVQ YVKFLQLQIK LLSSDEMWMY APLAYNGMEI GLFDAKNLRV PPR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9SND9 | 1e-65 | B9SND9_RICCO; DNA binding protein, putative | ||||
STRING | XP_002527508.1 | 2e-66 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0035s0125.1.p |