PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0031s0065.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 331aa    MW: 36599.6 Da    PI: 8.4655
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0031s0065.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.8e-15166225155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Kalax.0031s0065.2.p 166 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 225
                          789******************655454477446*************************98 PP
2AP223.71.2e-07268300136
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                          s y+GV+++++ grW A+I  +     +k  +lg+f
  Kalax.0031s0065.2.p 268 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 300
                          78****************988532...5*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-21166233No hitNo description
SuperFamilySSF541717.19E-17166234IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-16167234IPR001471AP2/ERF domain
PfamPF008478.9E-12167225IPR001471AP2/ERF domain
PROSITE profilePS5103218.663167233IPR001471AP2/ERF domain
SMARTSM003802.9E-29167239IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-6268302IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-5269302IPR001471AP2/ERF domain
PROSITE profilePS510328.939269302IPR001471AP2/ERF domain
SMARTSM003807.0E-4269310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTDGDGARGA PRFENLLGCR YPNTDSLVEQ CKASDEAYQT DLNDPCPPRV PEAFGNFGQI  60
GDLFGSYSDG GGDGGNNGYG GVPFDGATSV SGFKSLMRLH PCSACFYCEK RDNGVEPSDN  120
LLALCTSNGT SQGSELSDHR KRAVEASAAV EPVPRKNIDT FGQRTSQFRG VTRHRWTGRY  180
EAHLWDNSCR KEGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTTTHT NFPLVNYEKE  240
VEEMKNMTRH EYVANLRRKS CGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  300
SNSPFSSLQS LRHSNLSLHV LIALIAIHEV *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022777228.11e-110AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-96AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1U8B0271e-106A0A1U8B027_NELNU; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_010273924.11e-107(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.15e-94AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]