PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0029s0124.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31094.2 Da PI: 7.5093

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0029s0124.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	125	179	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t++q Lee F+++++++ ++++ LAk+lgL rqV vWFqNrRa+ k Kalax.0029s0124.1.p 125 RKKLRLTRDQSLLLEETFKEHNTLNPRQKQALAKQLGLRARQVEVWFQNRRARTK 179 788899***********************************************98 PP
2	HD-ZIP_I/II	114.3	7.4e-37	125	214	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+++q+ lLEe+F+e+++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E ++e++kr++++l+++ +rL+kev+eLr + Kalax.0029s0124.1.p 125 RKKLRLTRDQSLLLEETFKEHNTLNPRQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEAECEYMKRNCESLMDRVRRLQKEVNELR-A 213 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Kalax.0029s0124.1.p 214 L 214 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-18	107	179	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.01E-18	111	182	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	121	181	IPR001356	Homeobox domain
SMART	SM00389	7.0E-15	123	185	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-15	125	179	IPR001356	Homeobox domain
CDD	cd00086	2.29E-15	125	182	No hit	No description
PRINTS	PR00031	1.1E-5	152	161	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	156	179	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	161	177	IPR000047	Helix-turn-helix motif
SMART	SM00340	8.0E-18	181	224	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSAATQRKVI EMSSSDFGLG DLDLNLSLHV TTEPLTQELQ PLEPDSFSPI PVLSLAPDLS 60 PGQKVVDLTR SPTSGDQVEE GGSQNSTLST LSLKRTHPEE ELHQVPDRES PPRGGSDEED 120 GENARKKLRL TRDQSLLLEE TFKEHNTLNP RQKQALAKQL GLRARQVEVW FQNRRARTKL 180 KQTEAECEYM KRNCESLMDR VRRLQKEVNE LRALKLAPQF YMQMPPATTL TLCPSCERVG 240 IPTPAGGPVN KSRAGVERGI GPVSGGPWAS GPGQMNHRPF *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	181	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018839633.1	2e-83	PREDICTED: homeobox-leucine zipper protein HAT4-like
TrEMBL	A0A2I4G6W7	4e-82	A0A2I4G6W7_JUGRE; homeobox-leucine zipper protein HAT4-like
STRING	Aquca_067_00037.1	9e-80	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	5e-71	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0029s0124.1.p