PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0029s0114.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 129aa MW: 14515.6 Da PI: 8.1117

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0029s0114.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.5	1.7e-41	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca Ck+l+rkC+++C++apyfp ++p kf nvhk+FG snv+kll++lp+++r+da++s++yeA ar+rdPv+G+v+ i +lq+q++ l Kalax.0029s0114.1.p 10 PCACCKFLKRKCPPECIFAPYFPPQDPYKFINVHKIFGSSNVSKLLNELPPHQRSDAVESMAYEAAARVRDPVHGCVAEIYSLQRQVQLL 99 7*************************************************************************************** PP DUF260 91 kaelallkee 100 ++el++++++ Kalax.0029s0114.1.p 100 QKELEAANAR 109 **998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.389	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MASSGFFDSP CACCKFLKRK CPPECIFAPY FPPQDPYKFI NVHKIFGSSN VSKLLNELPP 60 HQRSDAVESM AYEAAARVRD PVHGCVAEIY SLQRQVQLLQ KELEAANARL RNYETLNNYP 120 AYSLPWNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-51	8	113	9	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-51	8	113	9	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891897.1	1e-55	LOB domain-containing protein 25
Refseq	XP_021891898.1	1e-55	LOB domain-containing protein 25
Swissprot	Q9FML4	4e-54	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2G3C9T0	4e-54	A0A2G3C9T0_CAPCH; LOB domain-containing protein 6
TrEMBL	A0A445G434	5e-54	A0A445G434_GLYSO; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	K7MKN0	5e-54	K7MKN0_SOYBN; Uncharacterized protein
STRING	evm.model.supercontig_110.17	4e-55	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-56	LBD family protein

Link Out ? help Back to Top
Phytozome	Kalax.0029s0114.1.p

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]