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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kalax.0029s0063.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
SRS |
| Protein Properties |
Length: 222aa MW: 24538.3 Da PI: 8.5903 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0029s0063.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 170.9 | 6.4e-53 | 12 | 152 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92
s +++C+dCGnqak+dC+++RCRtCCksrgf C+thvkstWvpa++rr+ ++q++ + +a+s ++ +++ +l + + +
Kalax.0029s0063.1.p 12 SSRMACHDCGNQAKRDCVYMRCRTCCKSRGFRCQTHVKSTWVPAYRRRHSHTQHHHHQLL------DASSTGQQ----QHAVQLLNPRGP 91
56899*******************************************975544443222......22222222....345566677777 PP
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
+ +s e e +P+e+ s+a+frcv v+s +d e++aYq+avsigGh+fkGiLydqG+e
Kalax.0029s0063.1.p 92 NPTSGLE-EGLMFPPEITSSAMFRCVVVRSSEDnVIEQYAYQAAVSIGGHLFKGILYDQGPE 152
7766644.4556*****************999945688**********************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MRQGVGARSS SSSRMACHDC GNQAKRDCVY MRCRTCCKSR GFRCQTHVKS TWVPAYRRRH 60
SHTQHHHHQL LDASSTGQQQ HAVQLLNPRG PNPTSGLEEG LMFPPEITSS AMFRCVVVRS 120
SEDNVIEQYA YQAAVSIGGH LFKGILYDQG PELSPTPQHQ NPTTAPPPSH HHHHQYLGNE 180
GPSSSTAPPP LEAPATAFAT QQRPDYNPSP FQTGTHVFFH Q*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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