PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0029s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 409aa    MW: 45998 Da    PI: 6.735
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0029s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.22.5e-073463782254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Kalax.0029s0012.1.p 346 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 378
                          69*****************************87 PP
2ELK29.31.9e-10299320122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Kalax.0029s0012.1.p 299 ELKHELKQGYKDKIVDIREEIL 320
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.0E-20133177IPR005540KNOX1
PfamPF037902.3E-17135176IPR005540KNOX1
SMARTSM012564.8E-24187242IPR005541KNOX2
PfamPF037915.6E-16193241IPR005541KNOX2
SMARTSM011885.1E-4299320IPR005539ELK domain
PROSITE profilePS512139.969299319IPR005539ELK domain
PfamPF037891.4E-5299320IPR005539ELK domain
PROSITE profilePS5007111.483319382IPR001356Homeobox domain
SuperFamilySSF466892.78E-15321384IPR009057Homeodomain-like
SMARTSM003893.0E-9321386IPR001356Homeobox domain
CDDcd000861.55E-10322383No hitNo description
Gene3DG3DSA:1.10.10.604.8E-24326384IPR009057Homeodomain-like
PfamPF059201.4E-17339378IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTYQSSGNHI QSEMDQLQQF SEQHMSGNSV VSHHHHPHVA VAGGGGPTWL NTAVIQHQRN  60
HSHNQYVAAI DNNTNFQLHL QTNSDSSNSP ATTGANRWMS PEAKNNISRG GFRKEEEMMI  120
VSEYGGVINW ENARFKAEIL SHPLYDQLLA AHVSCLRIAT PVDQLPRIDA QLAQSQNLAA  180
KYAAAVQGSC ADDKEQLDQF MTQYVLLLSS FKDQLQQHVR VHAMEAVMAC WDLEQALQNL  240
TGVSPGEGTG ATMSDDEDDR ADGETNMFDS GMDCSDSMGF GPLVPTDSER SLMERVRQEL  300
KHELKQGYKD KIVDIREEIL RKRRAGKLPG DTTSHLKAWW RSHSKWPYPT EEDKARLVQE  360
TGLQLKQINN WFINQRKRNW HSNSSTATTS KSKRKSNAGE TSNNERFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2727900.0EU272790.1 Kalanchoe x houghtonii class 1 knox protein (KN4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648713.11e-174PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-168KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB1P3820.0B1P382_9MAGN; Class 1 knox protein
STRINGVIT_04s0008g06130.t011e-173(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-161KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]