PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0028s0071.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 278aa MW: 31038.6 Da PI: 5.2319

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0028s0071.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.9e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+++ + +G g W +++ g++R++k+c++rw++yl Kalax.0028s0071.1.p 14 KGAWTAEEDRMLAEYMEAHGEGKWPNVPNVTGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55	1.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++yl Kalax.0028s0071.1.p 67 RGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 112 7899****************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.503	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.67E-9	16	61	No hit	No description
PROSITE profile	PS51294	26.708	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGRRPCCAKE GLNKGAWTAE EDRMLAEYME AHGEGKWPNV PNVTGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEVKNYWNT YLSKKIGSSN 120 KNNTKKKQQQ PPFHVAQQTS MNHQVLLEEE KSSLVVTASE DQLKNSNYML NTNSSQKVGS 180 GSNEDCLTLE EIIEFAEFGG GKTQQNNIVG ADPGSSSTVQ HDSFCPLGPE SNLAWPGHKD 240 GQWDDWLLDA MAADAEDWLP DCDVRDFLNS VETDSTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047497.1	2e-69	PREDICTED: myb-related protein 330
TrEMBL	A0A059CLX4	5e-68	A0A059CLX4_EUCGR; Uncharacterized protein
STRING	XP_010047497.1	9e-69	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-57	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Kalax.0028s0071.1.p