PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0026s0186.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 19199.1 Da PI: 8.8013

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0026s0186.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.1	5.3e-19	24	70	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ s rqvtfskRr+g++ KA+EL vLC+ae a+i +s k+y + Kalax.0026s0186.1.p 24 IKCPSARQVTFSKRREGLFRKASELAVLCGAEFAIIAISGGSKVYSF 70 677789**************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.292	14	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.9E-22	14	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.46E-24	15	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-17	16	36	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-20	23	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-17	36	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-17	51	72	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MMRSDEQVTR KHTRGRRKIP IEKIKCPSAR QVTFSKRREG LFRKASELAV LCGAEFAIIA 60 ISGGSKVYSF GNPDAGTVIN HYLNKRKMMR DYHSIVDEEA IGSYVRAVEA LEGEKRKLAA 120 ERGGGGKGFE EWKEEKIQEM SLEEMEEYLK WLECLRTEIV EKISEPLA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-23	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Kalax.0026s0186.1.p