PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0026s0057.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 529aa    MW: 60165.1 Da    PI: 6.5422
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0026s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix674e-21209305185
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                          +Wt++ v++Li a+  ++++ + +            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ +++++++
  Kalax.0026s0057.1.p 209 KWTDNVVRLLISAVACVGDDGSLDGveglrrksgilQKKGKWKTVSKIMISKGCSVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVEN 298
                          7**************777777754334445556788**********************************************56999999 PP

             trihelix  79 cpyfdql 85 
                           ++ d++
  Kalax.0026s0057.1.p 299 PALMDSM 305
                          9888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-19207332No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MNKSGDFDGE DAKSSKLKKM KTTMMRKDSR VVDSYECFDF VLMIRIHFDL DSCNCHFDQD  60
KCLTGRRQCA LVSSRALANV FSEDIRHHRR KAVIMDNSGL GCGFLSGLNG VMLDLESPIN  120
KNQQVQMDPS LMNHQHHVDK ISGLGLGHHS MGLFESRNCN SNGISMNFGK GKAIAVTSNE  180
NTSDDDEDLD GDNCHGPNEK RRSPWHRMKW TDNVVRLLIS AVACVGDDGS LDGVEGLRRK  240
SGILQKKGKW KTVSKIMISK GCSVSPQQCE DKFNDLNKRY KRLNEILGRG TSCRVVENPA  300
LMDSMPNLSS KMKDVVRKIL CSKHLFYQEM CAYHNGQRIP NCHDLDLQGL SVPLARSTLD  360
HHGPEEEEPD EDDDPDDNDL DNNDHHIAAD DSARVRKRKS PNEDNDNLFS HSSALDEMEA  420
EMAAIVEDPT KTLVDKRECI KKRMMLLLEH RVDIQAEALE IESRHFKWLR YQHKKDGEFM  480
KLKLENERQK LDYERMELLI HEKQLELESK KPQEGEACVG LEILSVRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830974.11e-161PREDICTED: uncharacterized protein LOC108998738
TrEMBLA0A2I4FH561e-159A0A2I4FH56_JUGRE; uncharacterized protein LOC108998738
STRINGcassava4.1_007480m1e-159(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-74sequence-specific DNA binding transcription factors