PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Kalax.0024s0136.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 305aa MW: 34670.1 Da PI: 5.7513

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0024s0136.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.2	1.4e-48	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+P+deel+++yL kk++++++ ++ e+d++++ePw+Lp+++k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd+ Kalax.0024s0136.1.p 10 LPPGFRFNPSDEELICHYLYKKIANEEVLK-GTLMEIDLHTCEPWQLPEMAKLNASEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDR 98 79***********************655.78***********88888999****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +v++ + e+vg++ktLvfy +rap+g k+ W+mhe+rle Kalax.0024s0136.1.p 99 TVHDPiTFEVVGMRKTLVFYLNRAPNGIKSGWIMHEFRLE 138 988899*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-59	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.578	10	156	IPR003441	NAC domain
Pfam	PF02365	5.2E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGLKDIGATL PPGFRFNPSD EELICHYLYK KIANEEVLKG TLMEIDLHTC EPWQLPEMAK 60 LNASEWYFFS FRDRKYATGY RTNRATTCGY WKATGKDRTV HDPITFEVVG MRKTLVFYLN 120 RAPNGIKSGW IMHEFRLESP HTPPKEDWVL CRVFYKSKQG ENTNTTSPIS PPPNTFQNNL 180 HKPAIPSSSP PNNTTNNNTI SMTPQNNNTF HKQSTILHCE YQPQIMSLNP NSIVHHLVLE 240 PDQMADATPI SIGALARSGD HADDDCLRFL WELKEDDNND MDIISTLDDQ MGFEVDGNSM 300 VLFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	9	162	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-45	9	162	16	171	NAC domain-containing protein 19
4dul_B	2e-45	9	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050267.1	1e-116	PREDICTED: NAC domain-containing protein 21/22
TrEMBL	A0A061DNM9	1e-114	A0A061DNM9_THECC; NAC domain protein, IPR003441
STRING	EOX94424	1e-115	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-87	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Kalax.0024s0136.1.p