PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0173.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 292aa    MW: 30223.8 Da    PI: 7.1262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0173.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016130152123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC  Cgk F +   L  H  +H
  Kalax.0022s0173.1.p 130 YKCAVCGKEFGSYQALGGHKASH 152
                          9*********9999998888777 PP
2zf-C2H213.10.00028183205123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F++   L  H r+H
  Kalax.0022s0173.1.p 183 HECGICHKQFPTGQALGGHKRRH 205
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-8129205No hitNo description
PROSITE profilePS5015710.118130152IPR007087Zinc finger, C2H2
PfamPF139122.0E-12130154IPR007087Zinc finger, C2H2
SMARTSM003550.062130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
PfamPF139128.5E-12182207IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85183205IPR007087Zinc finger, C2H2
SMARTSM003550.22183205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATEALSQHP PGLSESEDLG CKNKQAGSLL DGGFAKRKRS KRPRCEGGGG GEEELVGALS  60
EADMDLARSL MMLANGVVEE ERVGEVKVGG GGEADGGCLG AKESVSMEDV SVPSLLTVAE  120
TGSAVKTESY KCAVCGKEFG SYQALGGHKA SHRKLFADKI ETATATAVLT AASGGATGGG  180
RVHECGICHK QFPTGQALGG HKRRHYEGTL GKQSHQSHNH KTAASSSGVT TATTSDGAGS  240
SLSHRGFDLN IPALPDLWPV SRFAAAEEEV ESPHPAKKPR VFSPNYVQIR I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-31salt tolerance zinc finger