PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0149.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 361aa    MW: 38764.6 Da    PI: 10.3377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30284341359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+ +++tY g+Hnh 
  Kalax.0022s0149.1.p 284 DEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTQLIVTYDGDHNHA 341
                          99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-15236280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-31271341IPR003657WRKY domain
PROSITE profilePS5081129.815277343IPR003657WRKY domain
SuperFamilySSF1182901.96E-25279342IPR003657WRKY domain
SMARTSM007742.3E-35282342IPR003657WRKY domain
PfamPF031063.1E-25284340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAVELMMGYR AAATENNLPA KMEEAASAGL QSVEQLIRLL SQRQQQMDRS NSNSNSNSNG  60
SCVNELSSKV ESSDLDYGAV ADVAVNKFKK MISLLDRSRT GHARFRRAPV AQKAADPVAQ  120
TSLRSEEKAS AQSSLNGGPR AIPTSTSSQR LPPLPQHHHH HHSHPVHHKI VHSANTVLTK  180
TAPKDSTATI SFSGASSFVS GLSGETESVQ PSMSSGFQFT LMSQSSGKPP LSSSLKRKCS  240
SVDDSSRCGG SSARCHCSKK RKSRVKRVVR IPAISLKMAD IPPDEFSWRK YGQKPIKGSP  300
HPRGYYKCSS VRGCPARKHV ERAVDDPTQL IVTYDGDHNH ALTSVKEAAA AAAALVLESS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-202793421476Probable WRKY transcription factor 4
2lex_A7e-202793421476Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452580.11e-124PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX02e-89WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S3BVC41e-123A0A1S3BVC4_CUCME; probable WRKY transcription factor 7 isoform X2
STRINGXP_008452579.11e-122(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-49WRKY DNA-binding protein 7