PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0120.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 317aa    MW: 35543.4 Da    PI: 5.3369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0120.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-132368348
                         SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          WT+eEd++l + ++ +G++ +W+ +a+++   +t  qc+ rw++yl
  Kalax.0022s0120.5.p 23 VWTQEEDDILREQIRIYGTDnNWAIVASKFS-DKTTRQCRRRWYTYL 68
                         6******************************.*************97 PP
2Myb_DNA-binding45.12.3e-1474117146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g WT+eEd ll +  +++G++ W+ Ia+++  gRt++ +k+r+ +
  Kalax.0022s0120.5.p  74 KGGWTPEEDALLCESQRKYGNK-WTEIAKMVS-GRTDNAVKNRFST 117
                          688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8311668IPR017930Myb domain
SMARTSM007172.7E-132070IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-202476IPR009057Homeodomain-like
CDDcd001677.30E-122468No hitNo description
PfamPF139215.2E-152485No hitNo description
SuperFamilySSF466892.13E-2648129IPR009057Homeodomain-like
PROSITE profilePS5129421.65169123IPR017930Myb domain
SMARTSM007171.1E-1473121IPR001005SANT/Myb domain
CDDcd001671.31E-1077118No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2077122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKKRSDSNTT EGANKLKERH IVVWTQEEDD ILREQIRIYG TDNNWAIVAS KFSDKTTRQC  60
RRRWYTYLNS DFKKGGWTPE EDALLCESQR KYGNKWTEIA KMVSGRTDNA VKNRFSTLCK  120
KKAKREALAE EDSTSLSSVG KKRAWLKNQP HKTGTEENQV PYKKIHRIRI SVPAESCNRE  180
KVVPGDYPLG EHTQIIPDLC EEPSGSSDYS TGSTLLSHVT EGTPTNQPMD ISELNQDSGS  240
EIRISLGQKE SEESMTMFGS LSYQDGFQSS QEPTSEEVFS AESAVEFGSP LQVIPLFPDE  300
SAELPSPVFS ESASHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-252412310108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2C9WM652e-83A0A2C9WM65_MANES; Uncharacterized protein
STRINGXP_008221735.16e-73(Prunus mume)
STRINGPGSC0003DMT4000657973e-73(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-58MYB family protein