PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0022s0052.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 1497aa MW: 164811 Da PI: 5.6487

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0022s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	729	770	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +++ d + lG++ ++ Ia+ + ++t +c+++++k Kalax.0022s0052.1.p 729 AWTSEERDIFRDKLASLGKD-FRNIASFLD-HKTTADCVEFYYK 770 7***************99.*****.*********98 PP
2	Myb_DNA-binding	24	8.8e-08	947	989	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g WT E +v vk +G++ + +I+ ++g +++ qcks++ k Kalax.0022s0052.1.p 947 GYWTDREKSVFVSSVKSYGKD-FYKISGCIG-TKSKDQCKSFYSK 989 67***************99.*****.********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-12	713	774	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.813	725	776	IPR017884	SANT domain
SMART	SM00717	4.2E-7	726	774	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-4	729	770	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.48E-10	944	995	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.752	944	995	IPR017884	SANT domain
SMART	SM00717	1.8E-5	945	993	IPR001005	SANT/Myb domain
CDD	cd00167	1.35E-4	949	987	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1497 aa Download sequence Send to blast
MPPGPLPWDP KEYFKAGSRS LTASRELTLS GSPKVHKRPV EGNEALIKTV RLDHELLQPS 60 DEVLEDAGAF QLRKRLCISS AVDENCSSNS GVSGSQKDMK LDGSADVLAE GACNASLSHS 120 LRMPHQESTS ISEGRVLEVI TDQKLADGIQ HHHDPNGYSL GLDCKPIRWP LSGSFSSHES 180 ELSQSSSSKS VPVEFSCSRI RLPLENRKSY QSATEDTITC VTPTTPSEDM SPWKRPRLRW 240 GEGLAKFEKT KSSGPNDMPT KSDPVSVISA QISYTASLVT LPSTACNSSP ESEEKSTSKA 300 VMADSRSDVT RTMFSECSNH LGSTSFNLEA LDLSVTNHTA PSLIEVINYD NQCSSDRSFR 360 SCSAMSNLLL LKSTILQAID MTESQVDLLE NELKSFDDEC GCNDLRCLPS DVPTSKFIKE 420 FGKVQEGASG MSCGHALPSN SSTKLFRVKV PLDSGNSGLK ADMDSPGTVT SKLVELSTFT 480 EPHVENGTRN DVDCCFDLDA SRFPQEIQKT SKFTSQEERK SNFCIDAFVR NNNSELVSSD 540 DHWDMSLDET EQLIDSIRAS NKESADKASE QFNGVFPVAE RIQGDSVEEG CSGDLFIREI 600 IIRKKKALRF KEHAVILKWK ALHSTWKDDK RLLSVRSHRP KAQKQWEMFS QTAQNNNPSV 660 SSNSLHDTNS SLNMGKLPFI SHMKHCRSVL KMPALILDDD ERRMCRFLSR NGLVEDPCAV 720 EKERSMINAW TSEERDIFRD KLASLGKDFR NIASFLDHKT TADCVEFYYK NHKSGSFAKT 780 VEKQERRMLD KSLYCNTYLV TSGKKWDRNM NTASLDILGA ASEIVARNSE SKEKKKKNSC 840 NILLHGLGCI QRPQKDSLIL DRPSDFRLAE YEIGTTDSEI LPGACGSASS EAVSSCLTSS 900 VNQEEGHRNG ISKTLSIISE PLSIPEDMQT DDDETCSEES SCELDVGYWT DREKSVFVSS 960 VKSYGKDFYK ISGCIGTKSK DQCKSFYSKA RKCLGLDVEL PDNDHEQQSV INDSNGDGSS 1020 AAFTSTLEAV PDTGSYKLNQ RIDEDLSLNA SVTSNVDSLS PDASMKLRTC HDQLKDKKGS 1080 LVLPSAEAKV EGDSVDRSAS DPDKLCACNK SAVSTDTDAQ ASANKSVDIS PSLPFVVHQV 1140 SSFALLEKEK CSMEPPLLHN QCGKTDTSRG SFQNIVSYFT GDAGTAKAPR KYSIDDRTFE 1200 FDASAPRHLY MSKGSVGTET SQECVLHHTS FGPSNSTPMY TAALPTPMVP FEKISVGETI 1260 SVGETQEHFQ RSHYVGNHLL NPDCAPSDKF FVSHNFEKET EKEKKGLAWN LNFEDSTVSR 1320 DSNSDSENRL LQYTCIPQGG YIQKCNSLNS NCSINGFPYL KNLVGPKKQG KQGNIKLFGQ 1380 VLIPPTAPES HSDSDLMEES KFTQLNGAQM DMGPSNQHDM FSGNENLPVR CFWDGRRMQN 1440 APLLVSRPIL LSHDASSSSI LDCKPLQTSA VPNVDAPPNA GSIFGNSLNR CTMPRL*

Sequence ? help Back to Top

Protein Sequence Length: 1497 aa Download sequence Send to blast

MPPGPLPWDP KEYFKAGSRS LTASRELTLS GSPKVHKRPV EGNEALIKTV RLDHELLQPS  60
DEVLEDAGAF QLRKRLCISS AVDENCSSNS GVSGSQKDMK LDGSADVLAE GACNASLSHS  120
LRMPHQESTS ISEGRVLEVI TDQKLADGIQ HHHDPNGYSL GLDCKPIRWP LSGSFSSHES  180
ELSQSSSSKS VPVEFSCSRI RLPLENRKSY QSATEDTITC VTPTTPSEDM SPWKRPRLRW  240
GEGLAKFEKT KSSGPNDMPT KSDPVSVISA QISYTASLVT LPSTACNSSP ESEEKSTSKA  300
VMADSRSDVT RTMFSECSNH LGSTSFNLEA LDLSVTNHTA PSLIEVINYD NQCSSDRSFR  360
SCSAMSNLLL LKSTILQAID MTESQVDLLE NELKSFDDEC GCNDLRCLPS DVPTSKFIKE  420
FGKVQEGASG MSCGHALPSN SSTKLFRVKV PLDSGNSGLK ADMDSPGTVT SKLVELSTFT  480
EPHVENGTRN DVDCCFDLDA SRFPQEIQKT SKFTSQEERK SNFCIDAFVR NNNSELVSSD  540
DHWDMSLDET EQLIDSIRAS NKESADKASE QFNGVFPVAE RIQGDSVEEG CSGDLFIREI  600
IIRKKKALRF KEHAVILKWK ALHSTWKDDK RLLSVRSHRP KAQKQWEMFS QTAQNNNPSV  660
SSNSLHDTNS SLNMGKLPFI SHMKHCRSVL KMPALILDDD ERRMCRFLSR NGLVEDPCAV  720
EKERSMINAW TSEERDIFRD KLASLGKDFR NIASFLDHKT TADCVEFYYK NHKSGSFAKT  780
VEKQERRMLD KSLYCNTYLV TSGKKWDRNM NTASLDILGA ASEIVARNSE SKEKKKKNSC  840
NILLHGLGCI QRPQKDSLIL DRPSDFRLAE YEIGTTDSEI LPGACGSASS EAVSSCLTSS  900
VNQEEGHRNG ISKTLSIISE PLSIPEDMQT DDDETCSEES SCELDVGYWT DREKSVFVSS  960
VKSYGKDFYK ISGCIGTKSK DQCKSFYSKA RKCLGLDVEL PDNDHEQQSV INDSNGDGSS  1020
AAFTSTLEAV PDTGSYKLNQ RIDEDLSLNA SVTSNVDSLS PDASMKLRTC HDQLKDKKGS  1080
LVLPSAEAKV EGDSVDRSAS DPDKLCACNK SAVSTDTDAQ ASANKSVDIS PSLPFVVHQV  1140
SSFALLEKEK CSMEPPLLHN QCGKTDTSRG SFQNIVSYFT GDAGTAKAPR KYSIDDRTFE  1200
FDASAPRHLY MSKGSVGTET SQECVLHHTS FGPSNSTPMY TAALPTPMVP FEKISVGETI  1260
SVGETQEHFQ RSHYVGNHLL NPDCAPSDKF FVSHNFEKET EKEKKGLAWN LNFEDSTVSR  1320
DSNSDSENRL LQYTCIPQGG YIQKCNSLNS NCSINGFPYL KNLVGPKKQG KQGNIKLFGQ  1380
VLIPPTAPES HSDSDLMEES KFTQLNGAQM DMGPSNQHDM FSGNENLPVR CFWDGRRMQN  1440
APLLVSRPIL LSHDASSSSI LDCKPLQTSA VPNVDAPPNA GSIFGNSLNR CTMPRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	687	777	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	687	777	4	93	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0022s0052.1.p