PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0021s0053.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 450aa MW: 50593.1 Da PI: 6.5304

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0021s0053.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.4	6.6e-05	63	120	5	52
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl..........gLterqVkvWFqNrR 52 +ft++++ e+e+l ++n + ae + LA k ++ + V +WF+ rR Kalax.0021s0053.1.p 63 FRFTRDEVAEMETLMKENASLPAEVAKALALKFsktrhergqsNVRSDSVNNWFKKRR 120 58*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-4	59	128	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MFANRTTKQR SARTKAPHTL THLFRSTTTT FQSDAKFTPP LDRDHQQPLM PEPDHEMPSR 60 YQFRFTRDEV AEMETLMKEN ASLPAEVAKA LALKFSKTRH ERGQSNVRSD SVNNWFKKRR 120 HVISKANRAL SSVRSSRPSI LSTVAKMQQS PMPFQDKLQS EDEEASSKES SEEKSAEEGN 180 FGEGTLGAIV PSSTISNSVE ILDQMDVSPQ PLSSRENPKY EVDGVLARLA KFRTAQLSQH 240 TGSTPSLALS DLDMVNHAKA TLEKLEGISL VDFSSYQSDF DMAIRILVEK GSPSDVKKTE 300 LLLLQEQVHE IAKAHVQARE ELSKCNDFTE KLTEASETTD KLMKKAVLLE EKYNKIPQDL 360 SAVSRKISEL EAALVQAKTE LEIMRGDQDD VSNELAKLRE SLESVYKHMK SLKAEEAGII 420 KKRVETEEAL EKSTEEWVRL THLKAFTVI*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MFANRTTKQR SARTKAPHTL THLFRSTTTT FQSDAKFTPP LDRDHQQPLM PEPDHEMPSR  60
YQFRFTRDEV AEMETLMKEN ASLPAEVAKA LALKFSKTRH ERGQSNVRSD SVNNWFKKRR  120
HVISKANRAL SSVRSSRPSI LSTVAKMQQS PMPFQDKLQS EDEEASSKES SEEKSAEEGN  180
FGEGTLGAIV PSSTISNSVE ILDQMDVSPQ PLSSRENPKY EVDGVLARLA KFRTAQLSQH  240
TGSTPSLALS DLDMVNHAKA TLEKLEGISL VDFSSYQSDF DMAIRILVEK GSPSDVKKTE  300
LLLLQEQVHE IAKAHVQARE ELSKCNDFTE KLTEASETTD KLMKKAVLLE EKYNKIPQDL  360
SAVSRKISEL EAALVQAKTE LEIMRGDQDD VSNELAKLRE SLESVYKHMK SLKAEEAGII  420
KKRVETEEAL EKSTEEWVRL THLKAFTVI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.2	1e-07	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Kalax.0021s0053.1.p