PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0092.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 439aa    MW: 48969.7 Da    PI: 9.9522
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.65.9e-2461342128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdk 90 
                           pG+rF Ptdee++v+yL++k+++ +++   + ++ d+ +++P++L    k+++++++fF+k+ +++ t+  + r  k g+W+   g+++
  Kalax.0020s0092.1.p   6 EPGYRFWPTDEEIIVRYLRRKMADPHFKSRAIPDKEDMSSFDPRELYDGRKTSQEHVFFFTKKTSRQGTKLSRARLGKGGFWSyLEGTER 95 
                          59**************************96656666**********86667788999***********999999999*****97799*** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s    ++ l+g+k t  f   ++p    t+W m ey l
  Kalax.0020s0092.1.p  96 RIYSDsegSNLLIGVKATYSFC--TNPGLIITNWNMMEYGL 134
                          ***986544455*********9..788889*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.9955150IPR003441NAC domain
SuperFamilySSF1019417.59E-316150IPR003441NAC domain
PfamPF023652.6E-147133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGTHSEPGYR FWPTDEEIIV RYLRRKMADP HFKSRAIPDK EDMSSFDPRE LYDGRKTSQE  60
HVFFFTKKTS RQGTKLSRAR LGKGGFWSYL EGTERRIYSD SEGSNLLIGV KATYSFCTNP  120
GLIITNWNMM EYGLPGNKPL DWVVCRVFTK GNGKVDPPEK RPAASGSSST APTEILQHSE  180
RSRKTATTNF SAGPVASNND SSQLNFINTA LGSSSMPMYT WPAMLRQDVA SLGTVYRSQE  240
HSGERRGYTL NQPRLNMATQ QQQRRRPRPV NTHSDEQWQP VNMPSTTLQG LLGPAHPAST  300
MVSTTPYSYS MVNQQQLPRP NLQLDIGSII DSGTLGWTFN PNFTQPFGMP ILQGQYQPAY  360
PANNYNMENQ QPPGITTPPI LPPDVPVGGN FNPNLTQPDC GSSSSRSSRN RRPRSGNYDQ  420
SSVPPQGSDS QPSKYRKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-13715019165NO APICAL MERISTEM PROTEIN
1ut4_B3e-13715019165NO APICAL MERISTEM PROTEIN
1ut7_A3e-13715019165NO APICAL MERISTEM PROTEIN
1ut7_B3e-13715019165NO APICAL MERISTEM PROTEIN
4dul_A3e-13715019165NAC domain-containing protein 19
4dul_B3e-13715019165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-20NAC domain containing protein 58