PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0089.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 468aa    MW: 52516.3 Da    PI: 8.8093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.14.1e-24331662128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr..atksgyWkatgk 88 
                           pG+rF Ptdee++v+yL++k+++ +++   + ++ di +++Pw+L    k+++++++fF+k+  k+++ g + +r    k g W+ +g+
  Kalax.0020s0089.1.p  33 EPGYRFWPTDEEIIVHYLRRKIADPEFKSRAIPDKEDISSFDPWELYDGRKTSQEHVFFFTKKTIKTNQrGIKMSRvrFGKGGCWNYSGT 122
                          59**************************96656666**********86666778899***99987766437777773246799******* PP

                  NAM  89 dkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ ++s+        ++ ++g+k+t  fy g       t+W m ey l
  Kalax.0020s0089.1.p 123 ETWIYSHsegsnlqsSNLQIGVKETYKFYIG----LILTKWNMMEYGL 166
                          ******8766655544445**********55....35789******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3131182IPR003441NAC domain
PROSITE profilePS5100532.03832182IPR003441NAC domain
PfamPF023657.2E-1634165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MESHSENQQL VAAENQESDS AAAPGGQQEI QSEPGYRFWP TDEEIIVHYL RRKIADPEFK  60
SRAIPDKEDI SSFDPWELYD GRKTSQEHVF FFTKKTIKTN QRGIKMSRVR FGKGGCWNYS  120
GTETWIYSHS EGSNLQSSNL QIGVKETYKF YIGLILTKWN MMEYGLPGNK PLDWVVCRVF  180
TKGNGKVDPP EKLPAASGSS STAPTENLQH SERSRKKATT RFSEGPVASN NDSSQLNFIN  240
TALGSSSMHM YTWPAMLQQD VASMGTVYRS QEHSGERRGY TLNQPRLNMA TQQQQRRRPR  300
PVNTHSDEQW QPVNMPTTTL QGQLGPVHPA STMVSTTPYS YSMVNQQQLL GPNLQPDVGS  360
IFGTGTPGWT FNPDFTQPFR MPILQGQYQP AYPANSYNME NQQLPGITTP PILPPDVPVG  420
GNFNPNLTQP DFGSNSSRNR RPRSGNYDQS SVPPQESDSQ PSKYRKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-153418219165NO APICAL MERISTEM PROTEIN
1ut4_B8e-153418219165NO APICAL MERISTEM PROTEIN
1ut7_A8e-153418219165NO APICAL MERISTEM PROTEIN
1ut7_B8e-153418219165NO APICAL MERISTEM PROTEIN
3swm_A1e-143418222168NAC domain-containing protein 19
3swm_B1e-143418222168NAC domain-containing protein 19
3swm_C1e-143418222168NAC domain-containing protein 19
3swm_D1e-143418222168NAC domain-containing protein 19
3swp_A1e-143418222168NAC domain-containing protein 19
3swp_B1e-143418222168NAC domain-containing protein 19
3swp_C1e-143418222168NAC domain-containing protein 19
3swp_D1e-143418222168NAC domain-containing protein 19
4dul_A8e-153418219165NAC domain-containing protein 19
4dul_B8e-153418219165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-20NAC domain containing protein 58