PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0086.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 396aa    MW: 44278.6 Da    PI: 4.7164
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.71.1e-081659340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ +   ++++fC +++ +lC+ C ++ H+       H++v
  Kalax.0020s0086.1.p 16 ARACDGCMLRRARWFCASDDAFLCHACDVSVHSAnqlagrHQRV 59
                         578*****999*********************668888889877 PP
2CCT66.48e-23340383144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ 
  Kalax.0020s0086.1.p 340 RVARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRV 383
                          89****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2391461IPR000315B-box-type zinc finger
PfamPF006437.6E-71660IPR000315B-box-type zinc finger
CDDcd000216.97E-111761No hitNo description
PfamPF062033.5E-17340382IPR010402CCT domain
PROSITE profilePS5101715.815340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLSECHTASA IGARTARACD GCMLRRARWF CASDDAFLCH ACDVSVHSAN QLAGRHQRVR  60
ISTASLGDGV AEWDRKVTRR ARTPRNGLKG KLELKEASSL IVPEIGVEEE QSCENEDLMV  120
FQVPVFDADC GFWNEDESTS AEELHRLLEF VPDDIQYTAG HEGLIGVDSS CDTELLDSKE  180
SKKMDVGFEN NERNYSRVKM EGGDDEIEAV LAFQFDSEMM NSDSRESLLD WDFGFESDEM  240
MVKGEEDVKM IAEQSGGEEA VPFGKGMLLL KLNCEQVMSA WDDQGCPWMD GTPPEFDPIR  300
DGWPKFPGVR DANAGLGNTN PDDENGGSSA GGGRVVSEER VARVTRYREK RRTRLFSKKI  360
RYEVRKLNAE KRPRMKGRFV KRVQSYVGPQ ITSLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350366RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-58B-box type zinc finger protein with CCT domain