PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 165aa    MW: 18705.1 Da    PI: 8.6166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed++l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0020s0029.1.p 14 KGAWTKAEDDRLIAHIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding58.21.8e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Kalax.0020s0029.1.p  67 RGNFTDDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129414.767961IPR017930Myb domain
SMARTSM007176.2E-121363IPR001005SANT/Myb domain
SuperFamilySSF466898.44E-2913108IPR009057Homeodomain-like
PfamPF002499.5E-141461IPR001005SANT/Myb domain
CDDcd001673.81E-91661No hitNo description
PROSITE profilePS5129428.24562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-2865116IPR009057Homeodomain-like
SMARTSM007178.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1667111IPR001005SANT/Myb domain
CDDcd001674.20E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKA EDDRLIAHIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRKKLLSRG  120
VDPINHQSTQ ESSDHRKTTR GNTRDPEDAE DTDLNLELQI SPPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243289.12e-92PREDICTED: myb-related protein 308-like
SwissprotP813931e-89MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1J6IJV65e-91A0A1J6IJV6_NICAT; Transcription repressor myb4
STRINGEMJ018021e-89(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-88myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]