PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0018s0038.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 397aa MW: 43455 Da PI: 7.2226

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0018s0038.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	28	88	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++++kcprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++ Kalax.0018s0038.1.p 28 PDHHVKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 88 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.0E-33	30	86	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-28	32	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MSPDQTPAKV ATAAPKEGQD RKLRLPPPDH HVKCPRCDSP NTKFCYYNNY SLSQPRHFCK 60 TCRRYWTKGG ALRNVPIGGG CRKNKKMKQR LAGMSNSRDS SSCEIMGSTT GGLNFFQGFL 120 TPSMDFQLGS INTPPPPSTS MFPVVTGGVD TNFSLYEPHH SASQVNSSHH QSSSAVGTLM 180 GFNYLKPAAQ TGSGGDVLLG GIQQQLGSSS NNSMIVHSSL ASSIESLSSI NQELHWKLQQ 240 QRLAVLFSSG DHPEKRISGQ TDMGQVEEEH QFDHHQQPQS QAQKFLLQPI LFQNLETTKE 300 AHQYSAEESR IMEGAKVPEK SSLVENGGGN NSTTEWFFDV NPYTNGSRSN NSGGLNNDDS 360 MINQAAVVND DNPNNNYWNT GIQAWSDLQH YNGALP*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MSPDQTPAKV ATAAPKEGQD RKLRLPPPDH HVKCPRCDSP NTKFCYYNNY SLSQPRHFCK  60
TCRRYWTKGG ALRNVPIGGG CRKNKKMKQR LAGMSNSRDS SSCEIMGSTT GGLNFFQGFL  120
TPSMDFQLGS INTPPPPSTS MFPVVTGGVD TNFSLYEPHH SASQVNSSHH QSSSAVGTLM  180
GFNYLKPAAQ TGSGGDVLLG GIQQQLGSSS NNSMIVHSSL ASSIESLSSI NQELHWKLQQ  240
QRLAVLFSSG DHPEKRISGQ TDMGQVEEEH QFDHHQQPQS QAQKFLLQPI LFQNLETTKE  300
AHQYSAEESR IMEGAKVPEK SSLVENGGGN NSTTEWFFDV NPYTNGSRSN NSGGLNNDDS  360
MINQAAVVND DNPNNNYWNT GIQAWSDLQH YNGALP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-33	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Kalax.0018s0038.1.p